PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005222.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 224aa    MW: 24121 Da    PI: 5.8683
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005222.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.25.4e-07671081055
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  Do005222.1  67 KVRRERISERMRVLQALVPGC----DKVTGKALILDEIINYVQSLQ 108
                 88******************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.10357107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-1460124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-663113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-867112No hitNo description
Gene3DG3DSA:4.10.280.101.3E-1270121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEHGLANASH GTPSFLFCHG GAAAADSASI ETSSGVLDTS PRGTASVDKK IRKPREDSAS  60
LSSAQSKVRR ERISERMRVL QALVPGCDKV TGKALILDEI INYVQSLQNQ VEFLSMRIAS  120
LSPVLYGFGM DSDAYSDHTQ KMEGMIHPEA LAMPTSVMNR APSQAIMDTN TSTSSPSYEI  180
HGDGGTTGIS FPQDNGSYIL QTAGEPRQEL FNQAVFSNHM CSFQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005222.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0855811e-137BT085581.1 Zea mays full-length cDNA clone ZM_BFc0036H10 mRNA, complete cds.
GenBankEU9621211e-137EU962121.1 Zea mays clone 240361 bHLH transcription factor GBOF-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803717.11e-142transcription factor bHLH137-like
TrEMBLA0A1E5V4V01e-166A0A1E5V4V0_9POAL; Transcription factor bHLH137
STRINGPavir.Ba01554.1.p1e-138(Panicum virgatum)
STRINGPavir.J05063.1.p1e-138(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.27e-34bHLH family protein