PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do005225.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NAC

Protein Properties

Length: 258aa MW: 28326.1 Da PI: 10.4861

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do005225.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	122.2	4.4e-38	11	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lppGfrFhPtdeelvv+yL++k+ +++l++ vi+ v d+ + +PwdLp a+e e yfFs r+ ++ ++r++ sgyWkatgk+k+v+ + Do005225.1 11 LPPGFRFHPTDEELVVQYLRRKALARPLPA-AVIPVVhDVARRDPWDLP---GASEGEAYFFSLRRAPATGRGGRRRTAGSGYWKATGKEKPVFLQcgt 105 79**************************.8899998*******...3466799*9888766666677899***********9766 PP NAM 96 kgelvglkktLvfykgrapkge..ktdWvmheyrl 128 ++ lvg+k+ L+f++ + p+++ +t Wvmheyrl Do005225.1 106 RQLLVGVKTALAFHRSEPPSSSssRTGWVMHEYRL 140 6666******88766543339******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.07E-46	8	174	IPR003441	NAC domain
PROSITE profile	PS51005	45.829	11	174	IPR003441	NAC domain
Pfam	PF02365	1.2E-24	12	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MERPAQAPRQ LPPGFRFHPT DEELVVQYLR RKALARPLPA AVIPVVHDVA RRDPWDLPGA 60 SEGEAYFFSL RRAPATGRGG RRRTAGSGYW KATGKEKPVF LQCGTRQLLV GVKTALAFHR 120 SEPPSSSSSR TGWVMHEYRL AVPAGVAVAE QRKNASHDCA VEPGEWVVCR VFLKNRPRNR 180 PSGDVDSKTL RNRASIAHRA VAPLQHREED AGRQQPLPLM LPQPSTSSCV TGVTDMSDQD 240 EVSSSGIKDA PAASQREA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-32	11	174	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-32	11	174	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-32	11	174	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-32	11	174	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-32	11	174	20	168	NAC domain-containing protein 19
3swm_B	2e-32	11	174	20	168	NAC domain-containing protein 19
3swm_C	2e-32	11	174	20	168	NAC domain-containing protein 19
3swm_D	2e-32	11	174	20	168	NAC domain-containing protein 19
3swp_A	2e-32	11	174	20	168	NAC domain-containing protein 19
3swp_B	2e-32	11	174	20	168	NAC domain-containing protein 19
3swp_C	2e-32	11	174	20	168	NAC domain-containing protein 19
3swp_D	2e-32	11	174	20	168	NAC domain-containing protein 19
4dul_A	2e-32	11	174	17	165	NAC domain-containing protein 19
4dul_B	2e-32	11	174	17	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269\|PubMed:24243147}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do005225.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM017008	1e-139	KM017008.1 Miscanthus lutarioriparius NAC10 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957303.1	1e-133	NAC domain-containing protein 41
Swissprot	O22798	8e-51	NAC41_ARATH; NAC domain-containing protein 41
TrEMBL	A0A1E5V4X7	0.0	A0A1E5V4X7_9POAL; NAC domain-containing protein 41
STRING	Si030942m	1e-132	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12805	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.1	6e-37	NAC domain containing protein 41

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]