PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005294.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 571aa    MW: 60407.1 Da    PI: 6.3248
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005294.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.4e-05114131219
                 EETTTTEEESSHHHHHHH CS
     zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                 +C++Cgk F+++ +L  H
  Do005294.1 114 VCENCGKEFTSWKSLLDH 131
                 6***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.05E-63254No hitNo description
SMARTSM003551.63254IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-53254IPR007087Zinc finger, C2H2
PROSITE profilePS501578.9333254IPR007087Zinc finger, C2H2
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
SuperFamilySSF576676.05E-6108133No hitNo description
SMARTSM00355180113133IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39113140IPR007087Zinc finger, C2H2
SuperFamilySSF576671.52E-7273296No hitNo description
PROSITE profilePS5015710.221274301IPR007087Zinc finger, C2H2
SMARTSM003550.13274296IPR015880Zinc finger, C2H2-like
PfamPF139124.6E-9274298IPR007087Zinc finger, C2H2
PROSITE patternPS000280276296IPR007087Zinc finger, C2H2
SuperFamilySSF576671.52E-7384411No hitNo description
PfamPF139127.9E-13388412IPR007087Zinc finger, C2H2
PROSITE profilePS501578.995389411IPR007087Zinc finger, C2H2
SMARTSM003551.6389411IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280391411IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MAMVMENQQP LVPAPPLPPP PPPPPLPQAY KHRCKVCKKG FMCGRALGGH MRAHGVTDDV  60
LSADGALDDD SGPFGGGGGG VDSSDAGSAS AATATAKRMY ALRTNPGRLK NCRVCENCGK  120
EFTSWKSLLD HGRCNYDEEE GDLNGNIGDV DNDGEEGEDL ALASGWSKGK RTRRTKLMVV  180
GNGSITEEQL PAPSSEEEDL ANFLVKLSSS STARPQVVVE VDQESCVVNK DEQRNRLLVP  240
QPISMIAPTM PQLKLLAPPQ VLPHHVSTVP RGMFECKACK KVFTSHQALG GHRASHKKVK  300
GCFAAKLESN HSDPPQPVAT SGSDNIKVIA DAIPAIITTE QKTTSVDGNP VNAGSAVIVM  360
ATAASEMAVD EVPAAASAVA PFKKKGKVHE CSICHRVFMS GQALGGHKRC HWLTTGAGDP  420
TTAVAKLQPF VTQDHVMHAM CQQLTLGRKM FDASDPFLDL NVPTNPSAEP AATRQQAAEL  480
NDSVLSLNAP ASLYMHSWGG QSNASNMNNT ATSGHYDAAE AAATEDEADS TSAKRAKISD  540
LKDMNMAGET SPWLQVGIGL PSEIDEKATQ G
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005294.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1075595e-34AK107559.1 Oryza sativa Japonica Group cDNA clone:002-130-B07, full insert sequence.
GenBankAP0050725e-34AP005072.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0708H12.
GenBankAP0052895e-34AP005289.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1112_F09.
GenBankAP0149585e-34AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126105e-34CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955118.10.0uncharacterized protein LOC101782881
TrEMBLA0A1E5UPA40.0A0A1E5UPA4_9POAL; Uncharacterized protein
STRINGSi019899m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.15e-18C2H2 family protein