PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005325.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 204aa    MW: 21387 Da    PI: 10.33
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005325.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-1855104255
         AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr ++ +gr++AeIrd +     r +r++lg+++++ eAa a+++a+ +l+g
  Do005325.1  55 HYRGVRKRP-WGRYAAEIRDpW-----RkTRVWLGTYDSPVEAAMAYDRAAVALRG 104
                 6********.**********88.....45************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.61E-2854111No hitNo description
Gene3DG3DSA:3.30.730.109.0E-2955111IPR001471AP2/ERF domain
PROSITE profilePS5103221.56255112IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-2155112IPR016177DNA-binding domain
SMARTSM003802.7E-3155118IPR001471AP2/ERF domain
PfamPF008476.9E-1255104IPR001471AP2/ERF domain
PRINTSPR003673.7E-95667IPR001471AP2/ERF domain
PRINTSPR003673.7E-97894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MQMEWDMRGV GHGGGGGVAD GGGAGARGGG GLVVGGVVVG GGDQQQQQQQ RVEAHYRGVR  60
KRPWGRYAAE IRDPWRKTRV WLGTYDSPVE AAMAYDRAAV ALRGTKARLN FGGGGGGGGR  120
GGRDPPVHHP RVPLQAPCQF GGLDVGHPSP WHVVYFPSRL HQAMASPVAA DIAASQPSTA  180
LELRTGPRAL PFDLNEPPSL LFGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1955111562ATERF1
3gcc_A2e-1955111562ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005325.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0404201e-69BT040420.1 Zea mays full-length cDNA clone ZM_BFc0090F19 mRNA, complete cds.
GenBankEU9735031e-69EU973503.1 Zea mays clone 399837 mRNA sequence.
GenBankKJ7269421e-69KJ726942.1 Zea mays clone pUT3488 AP2-EREBP transcription factor (EREB93) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809088.11e-78ethylene-responsive transcription factor RAP2-1-like
TrEMBLA0A1E5UZN31e-141A0A1E5UZN3_9POAL; Ethylene-responsive transcription factor 12
STRINGGRMZM2G066158_P012e-73(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.13e-29ERF domain protein 12