PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005486.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family SRS
Protein Properties Length: 158aa    MW: 16352.1 Da    PI: 10.7201
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005486.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702113.23.9e-35121202105
      DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstklssaeskke 99 
                 +sg+a+C+dCGnqakk+C+h+RCRtCC+srgf+C thv+stWvpaa+rrer q +  as   aa    a +k++r   +++++++ s+t +s+a+++++
  Do005486.1  12 GSGAATCHDCGNQAKKGCSHSRCRTCCNSRGFECDTHVRSTWVPAARRRERLQLAGGASPPPAA---PAVAKKPRLAcQTTTTTTNSRTFTSNATTPRS 107
                 57899**********************************************9998888766654...56667777662445566666778899999999 PP

      DUF702 100 letss.......l 105
                 l+tss        
  Do005486.1 108 LDTSSshqgnssA 120
                 9998755555553 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.2E-2815105IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.9E-251759IPR006510Zinc finger, lateral root primordium type 1
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MLDQGRGGSG SGSGAATCHD CGNQAKKGCS HSRCRTCCNS RGFECDTHVR STWVPAARRR  60
ERLQLAGGAS PPPAAPAVAK KPRLACQTTT TTTNSRTFTS NATTPRSLDT SSSHQGNSSA  120
PPTSTSAAPQ PRPPTCTAAP APRSSSASWA TVTRHELM
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005486.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9594123e-63EU959412.1 Zea mays clone 218086 LRP1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962238.13e-50protein LATERAL ROOT PRIMORDIUM 1
RefseqXP_022680709.13e-50protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A1E5WD481e-107A0A1E5WD48_9POAL; Uncharacterized protein
STRINGPavir.Cb01442.1.p7e-53(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.12e-23Lateral root primordium (LRP) protein-related