PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005566.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 242aa    MW: 26167.3 Da    PI: 7.9749
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005566.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.22.1e-10140162123
                 ---SS-EEEEEEE--TT-SS-EE CS
        WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                 ldDgy+WrKYG+K+vk+s++pr 
  Do005566.1 140 LDDGYKWRKYGKKSVKNSPNPRY 162
                 59*******************95 PP
2WRKY52.11.3e-161752151959
                 SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY  19 efprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ++ r+YYrC+++gC+vkk+ver+++dp++v+++Yeg Hnh 
  Do005566.1 175 DYYRNYYRCSTEGCNVKKRVERDKDDPSYVVTMYEGVHNHV 215
                 678*************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-29127216IPR003657WRKY domain
SuperFamilySSF1182901.05E-20133216IPR003657WRKY domain
PROSITE profilePS5081125.178135217IPR003657WRKY domain
SMARTSM007741.7E-30140216IPR003657WRKY domain
PfamPF031061.7E-16141214IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MHMALASWDS LAADAVFPAM AYRHPCSNGG GLASSGFYGA SSPAAALFPQ PAFGGGAAPG  60
LAPPQQPDAF ECLSDEGVSS VVPGTFGTPP PPPPPRQPRM PAEQVVPDAS SGYTTHVRGA  120
AAMATTDRIA FRVRSEEEVL DDGYKWRKYG KKSVKNSPNP RYNFTFGINA FKLIDYYRNY  180
YRCSTEGCNV KKRVERDKDD PSYVVTMYEG VHNHVSPGTI YYATQDAASG RFFVAGMHQL  240
GH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-19130217777Probable WRKY transcription factor 4
2lex_A9e-19130217777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005566.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586125e-44KU058612.1 UNVERIFIED: Panicum miliaceum WRKY24-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817958.11e-105probable WRKY transcription factor 57
TrEMBLA0A1E5W5H31e-179A0A1E5W5H3_9POAL; Putative WRKY transcription factor 50
STRINGPavir.Eb02766.1.p1e-100(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.13e-34WRKY DNA-binding protein 50