PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do005608.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Dof

Protein Properties

Length: 172aa MW: 17446.7 Da PI: 10.1286

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do005608.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	91.8	5.7e-29	85	140	4	58
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGg.grrkn 58 + l+cprC s++tkfCy+nny++ qPr++C+aCrryWt+GGalr v + grr+ Do005608.1 85 EPLPCPRCGSRETKFCYFNNYNVRQPRHLCRACRRYWTAGGALRRVASASpGRRRP 140 5789*****************************************98765255544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-19	85	127	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.3E-26	86	139	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.527	87	141	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	89	125	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MANLPDADAA GFKLFGKVIQ PPEAHHRAAE EGGASTSPPP ALPLATATPA AVLPPAAPPQ 60 SPPLPTPPPL SLQQAAGAGA GGSGEPLPCP RCGSRETKFC YFNNYNVRQP RHLCRACRRY 120 WTAGGALRRV ASASPGRRRP RPAARSAVAA AAAAIATASS ASAADEDGGG ER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do005608.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU954609	3e-88	EU954609.1 Zea mays clone 1473007 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969505.1	6e-53	dof zinc finger protein 5-like
TrEMBL	A0A1E5V2T5	1e-115	A0A1E5V2T5_9POAL; Uncharacterized protein
STRING	Sb03g030850.1	4e-50	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14716	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	4e-21	Dof family protein