PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do005620.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bHLH

Protein Properties

Length: 222aa MW: 23031.2 Da PI: 9.7787

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do005620.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.9	7.4e-08	37	100	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC................TTS-.STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkas.............kapskK.lsKaeiLekAveYIksLq 55 + +E++RR +++ +L +l+P+a ++p+k ++ + L A YIk+L+ Do005620.1 37 KDVEKNRRLHMKGLCLKLSSLIPPAArhasliseaaasaSNPNKDtVTQLDQLDSAAAYIKQLK 100 689*******************666********7777777**************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	7	1	32	No hit	No description
PROSITE profile	PS50888	8.677	31	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-10	35	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.14E-8	36	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.9E-5	37	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MKSRRQSSGG SSAGATAAGE GNTHSSGGGG GCKLERKDVE KNRRLHMKGL CLKLSSLIPP 60 AARHASLISE AAASASNPNK DTVTQLDQLD SAAAYIKQLK ERIEALKRRK EGGLGGSGCK 120 GGTAAAGISA GGGAAAVRMP VIEVRYQDGT LDVVLISEAG RPFKLHEVIT ALEQEGAEVV 180 SASFSVVGDK IFYTIHSQAL SPRIGLDAAR VSERLQDLLL LV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do005620.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT038818	1e-154	BT038818.1 Zea mays full-length cDNA clone ZM_BFb0332C18 mRNA, complete cds.
GenBank	KJ726868	1e-154	KJ726868.1 Zea mays clone pUT3409 bHLH transcription factor (bHLH76) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967963.1	1e-125	transcription factor bHLH168
TrEMBL	A0A1E5WHH6	1e-157	A0A1E5WHH6_9POAL; Uncharacterized protein
STRING	Si002847m	1e-124	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10586.1	1e-17	bHLH family protein