PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005844.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 223aa    MW: 24188.2 Da    PI: 6.509
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005844.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2461.3e-144394256
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                 y+GVr +    rWv+e+r+p     +  +r++lg++ t+e+Aa+a++ a+ +l+g+
  Do005844.1 43 LYRGVRARAGGTRWVCEVREP-----QaqARIWLGTYPTPEMAARAHDVAAIALRGA 94
                69****9999889****9999.....446*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.08E-2242104No hitNo description
PfamPF008474.1E-114293IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-2643104IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-1643104IPR016177DNA-binding domain
SMARTSM003804.5E-2543108IPR001471AP2/ERF domain
PROSITE profilePS5103221.02243102IPR001471AP2/ERF domain
PRINTSPR003679.1E-64455IPR001471AP2/ERF domain
PRINTSPR003679.1E-66783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MADAEDYSSA SSSSLSPPTS PGHQLPPKRR AGRKKFRETR HPLYRGVRAR AGGTRWVCEV  60
REPQAQARIW LGTYPTPEMA ARAHDVAAIA LRGARAADLN FPDSPHTLPR ARTASPEDIR  120
CAAAQGAELY RPSGGSIHHQ EIVLTTTAAP PPPPPPEPSA WPGTTTTAFL DEDAIFDMPG  180
LIDDMARGMM LTPPAMGKGL ADWSAVDDYD HTHADCTPLW MDY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005844.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276711e-120KJ727671.1 Zea mays clone pUT5598 AP2-EREBP transcription factor (EREB141) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457016.11e-92dehydration-responsive element-binding protein 1F
SwissprotA2WZI45e-85DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z55e-85DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLA0A1E5UPN71e-160A0A1E5UPN7_9POAL; Dehydration-responsive element-binding protein 1F
STRINGSb03g047170.14e-92(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-40C-repeat-binding factor 4
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]