PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005860.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ARR-B
Protein Properties Length: 638aa    MW: 68371.4 Da    PI: 6.7711
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005860.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.12e-28151204155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Do005860.1 151 KPRVVWSVELHQQFVNAVNHL-GIDKAVPKKILELMNVPGLTRENVASHLQKFRL 204
                 79*******************.********************************8 PP
2Response_reg50.51.2e-1737538109
                   HHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  38 llkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                   +l+e++  +D+i+ D+ mp+mdG++ll+     e++lp+i+++a +  + + + +k Ga d+l Kp+ +eel +
    Do005860.1   3 MLRENRrgFDVIISDVHMPDMDGFRLLELVGL-EMDLPVIMMSADSRTDIVMKGIKHGACDYLIKPVRMEELKN 75 
                   55555667*******************87754.558***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.6E-1541621IPR017053Response regulator B-type, plant
PROSITE profilePS5011032.091181IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.44E-19180No hitNo description
SuperFamilySSF521723.27E-23289IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.9E-282100No hitNo description
PfamPF000728.9E-15675IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466894.12E-20148208IPR009057Homeodomain-like
PROSITE profilePS5129411.674148207IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.8E-30148209IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-25151204IPR006447Myb domain, plants
PfamPF002497.1E-7153202IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
LTMLRENRRG FDVIISDVHM PDMDGFRLLE LVGLEMDLPV IMMSADSRTD IVMKGIKHGA  60
CDYLIKPVRM EELKNIWQHV VRKKFNENKD HEHSGSLDDT DRNRPTNNDN EYASSANDGG  120
DGSWKSQKKK REKEEDETDL ENGDPSSTSK KPRVVWSVEL HQQFVNAVNH LGIDKAVPKK  180
ILELMNVPGL TRENVASHLQ KFRLYLKRIA QHHAGIPHPF VAPASSAKVA PLGGLEFQAL  240
TASGQIPPQA LAALQDELLG RPTSSLALPG RDQSSLRLAA IKGNKPHGER EIAFGQPIYK  300
CQNNAYGAFP QSNQAVGGLP SFAAWPNNKL GMTDSPSALG NVSNSQNSNM LLHELQQQPD  360
TLLPGTLHNI DVKPSGIVMP SQSLNAFPAS EGISPNQNPL IIPSQSPSFL SSIPPSMKHE  420
PLLASSSPSN SLLGGIDMVN QASTSQPLIS THGANLPGLM NRSSNAMPSA GISNFQSGNN  480
PYGANQNAMG LSSRPPGVLK TESTDSLSHS YGYIGGSASV DSGLLSSQSK NPQYGLLQSP  540
NDVTGSWSPS QDIDGYGNTL GQGHPGSTSS NFQSSNVALG KLPDQGRGRN HGFVGKGTCI  600
PSRFAVDDVE SPTNNLSHSI GSSGDIVNPD IFGFSGQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-24147210164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0601300.0AB060130.1 Zea mays ZmRR8 mRNA for response regulator 8, complete cds.
GenBankEU9755450.0EU975545.1 Zea mays clone 492147 two-component response regulator ARR1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468245.10.0two-component response regulator ORR21
RefseqXP_021306470.10.0two-component response regulator ORR21
SwissprotQ8H7S70.0ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A1E5WFP90.0A0A1E5WFP9_9POAL; Two-component response regulator ORR21 (Fragment)
STRINGSb01g042400.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-92response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]