PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006064.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 232aa    MW: 25524.8 Da    PI: 8.0738
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006064.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.25.8e-31179354128
         NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ev s   ++++vg++ktLvfy grap+g+k+ Wvmhe+rl
  Do006064.1  17 TASEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDREVRSPaaSRAVVGMRKTLVFYLGRAPNGVKSCWVMHEFRL 93 
                 567*************************************99878888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.7081112IPR003441NAC domain
SuperFamilySSF1019411.31E-3715112IPR003441NAC domain
PfamPF023657.2E-152093IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MWWSLFWITR ADAAKLTASE WYFFSFRDRK YATGSRTNRA TKTGYWKATG KDREVRSPAA  60
SRAVVGMRKT LVFYLGRAPN GVKSCWVMHE FRLDSPHTPP KEDWVLCRVF QKRKDSEQDT  120
AAGSSSPTFA GSSQAVALPD DQPMMDAYVD QTGSSAVGFP PPQEHVGGFD PLMLHYNSVL  180
SHFPQEVSSS PMMALGLGSG GVGNGCGFFY DTGFEDMAAN IGGMGFPQGW MG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-291211864171NO APICAL MERISTEM PROTEIN
1ut4_B5e-291211864171NO APICAL MERISTEM PROTEIN
1ut7_A5e-291211864171NO APICAL MERISTEM PROTEIN
1ut7_B5e-291211864171NO APICAL MERISTEM PROTEIN
4dul_A5e-291211864171NAC domain-containing protein 19
4dul_B5e-291211864171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006064.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0170061e-157KM017006.1 Miscanthus lutarioriparius NAC8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976221.11e-124NAC domain-containing protein 21/22
SwissprotQ84TE61e-38NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A1E5WBM11e-172A0A1E5WBM1_9POAL; NAC domain-containing protein 21/22
STRINGSi010799m1e-123(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.15e-53NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]