PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do006082.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

HD-ZIP

Protein Properties

Length: 233aa MW: 26113.8 Da PI: 4.4571

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do006082.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.7	5.4e-20	37	90	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe+++++ e+++eLA++lg+ rqV vWFqNrRa++k Do006082.1 37 KKRRLTAEQVQLLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWK 90 56789************************************************9 PP
2	HD-ZIP_I/II	133.1	9.9e-43	36	128	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl++eqv+lLE+sFeee+kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE+dy++Lk+aydal+++++ L +++++Lr+++++ Do006082.1 36 EKKRRLTAEQVQLLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLETDYDRLKAAYDALAADHQGLLADNDSLRAQVNS 128 69***************************************************************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	18.204	32	92	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.42E-19	32	94	IPR009057	Homeodomain-like
SMART	SM00389	6.9E-19	35	96	IPR001356	Homeobox domain
CDD	cd00086	8.64E-18	37	93	No hit	No description
Pfam	PF00046	2.7E-17	37	90	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.3E-21	38	99	IPR009057	Homeodomain-like
PRINTS	PR00031	3.4E-6	63	72	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	67	90	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.4E-6	72	88	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.0E-16	92	134	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MAVLGMDDAA RVGKRPFFTT HEELLEEEYY DEQAPEKKRR LTAEQVQLLE RSFEEENKLE 60 PERKTELARR LGMAPRQVAV WFQNRRARWK TKQLETDYDR LKAAYDALAA DHQGLLADND 120 SLRAQVNSLT EKLQGKETSP SATTTAQEVD QQDEHTAASG TEKLLAQQLK DGLLSSGDCN 180 GHGALSSEEE DGGVISDEGC SFDLPDAMLT AIGVTHHGAE EAQLCNWTSW FWT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	84	92	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do006082.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU959701	0.0	EU959701.1 Zea mays clone 219449 homeodomain leucine zipper protein CPHB-5 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973433.1	1e-152	homeobox-leucine zipper protein HOX5
Swissprot	Q6ZA74	2e-98	HOX5_ORYSJ; Homeobox-leucine zipper protein HOX5
TrEMBL	A0A1E5V1D2	1e-171	A0A1E5V1D2_9POAL; Homeobox-leucine zipper protein HOX5
STRING	Si014228m	1e-152	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2609	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	4e-55	homeobox 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]