PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006095.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family YABBY
Protein Properties Length: 255aa    MW: 26989.8 Da    PI: 8.0187
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006095.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY218.81.7e-67212135170
       YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaae..shldeslkee....................lleelkveeen 81 
                 s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl+      +a   ++l+  + ++                    ll ++ +++ +
  Do006095.1  21 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCSNLLSVNLRGLLLPPSAPpaNQLSS-FGNSllsptsphglldefalqapsLLMDQASANLS 118
                 578********************************************9984443330033322.22224556788898888887666633344444444 PP

       YABBY  82 lksnvekeesastsvssekl.....senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                  +++  +++s  ++ ++  +     + +++ e+p+  p v+rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ihfgl
  Do006095.1 119 STMTGRSNSSCASNLPAPPMpaakpPVQQEPELPKSAPsVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 213
                 444433333344444455557888888999999998777******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.5E-7022213IPR006780YABBY protein
SuperFamilySSF470958.12E-8152206IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.5E-4162205IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MMSSSSSSSS AAFPLDHLAP SPTEQLCYVH CNCCDTILAV GVPCSSLFKT VTVRCGHCSN  60
LLSVNLRGLL LPPSAPPANQ LSSFGNSLLS PTSPHGLLDE FALQAPSLLM DQASANLSST  120
MTGRSNSSCA SNLPAPPMPA AKPPVQQEPE LPKSAPSVNR PPEKRQRVPS AYNRFIKDEI  180
QRIKAGNPDI THREAFSAAA KNWAHFPHIH FGLMPDQGLK KTFKAQDGAD DMLLKDGLYA  240
AAAAAAAANM GITPF
Functional Description ? help Back to Top
Source Description
UniProtSeems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006095.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9607730.0EU960773.1 Zea mays clone 228481 yabby15 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452852.11e-149protein YABBY 4
SwissprotA2X7Q31e-126YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6681e-126YAB4_ORYSJ; Protein YABBY 4
TrEMBLA0A1E5UN770.0A0A1E5UN77_9POAL; Protein YABBY 4
STRINGSb04g033590.11e-149(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.17e-64YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]