PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006215.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 190aa    MW: 19866.4 Da    PI: 9.9427
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006215.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.3e-191262155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++y+GVr ++ +gr++AeIrdp +   r+r++lg+f++ae Aa+a++ a++ l+g
  Do006215.1 12 PRYRGVRKRP-WGRFAAEIRDPAK---RARVWLGTFDSAEAAARAYDVAARTLRG 62
                68********.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-131262IPR001471AP2/ERF domain
CDDcd000184.89E-201270No hitNo description
SMARTSM003808.3E-351376IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-221370IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.7E-311371IPR001471AP2/ERF domain
PROSITE profilePS5103223.9991370IPR001471AP2/ERF domain
PRINTSPR003671.7E-101425IPR001471AP2/ERF domain
PRINTSPR003671.7E-103652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MCDAAAVAVA VPRYRGVRKR PWGRFAAEIR DPAKRARVWL GTFDSAEAAA RAYDVAARTL  60
RGPLARTNFP SAAASRLPLT SRPGGGACGL VAPAPAAPTC SSSSTVESSS GPRAAPRATA  120
APRNRRLVKP RPPRQTAPDA DCHSDCASSA SVVDDGDDAS TVRSRAPLDL NLPAPMDDDH  180
GLQLCTELRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-21671773Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006215.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9580141e-75EU958014.1 Zea mays clone 1640422 ethylene-responsive transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660304.11e-73ethylene-responsive transcription factor 7
TrEMBLA0A1E5WA881e-128A0A1E5WA88_9POAL; Uncharacterized protein
STRINGPavir.Ga00187.1.p7e-79(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51232758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.12e-22ethylene response factor 7