PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006238.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 336aa    MW: 35994.2 Da    PI: 4.5125
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006238.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.21.1e-0922501341
                HHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
      SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifs 41
                f++R++++ KKAeEL  LC+++vav+   
  Do006238.1 22 FARRKETLRKKAEELGSLCGVDVAVVCTD 50
                99***********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0017161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-141295IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.9231762IPR002100Transcription factor, MADS-box
PfamPF003198.6E-111753IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MTRGKGGPMR AAVSPHERLA WFARRKETLR KKAEELGSLC GVDVAVVCTD PGGAGDPYCW  60
PSREAASAVA RRYSALEPAE RAKHTEDHAA HVVRRLAEER DKLARVREGG VAGALGSWDG  120
SLEGVSEEKL RELLASIEGS LVAAKNRVLK LQAPLGGAAD RATFLPGLVH EDEATEEDSV  180
SATDNGVPPR PQPRCEADAG GGGGLGPPRS KNPNSANAAV PVDADEEVVA ENIVTAEDAG  240
DEVQILQPPG DADPDDAEWM RGLVDDLKKR PQPYNPAGYA AGIEYINVGR FLMERDAYDF  300
IRFDLGMPPP CIEPNSPDDD GEPLKLWSWV NTMPPP
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006238.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819832.11e-152uncharacterized protein LOC112896014
TrEMBLA0A1E5UTT70.0A0A1E5UTT7_9POAL; Uncharacterized protein
STRINGSi004941m1e-153(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1587778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.11e-12AGAMOUS-like 38