PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006298.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GATA
Protein Properties Length: 226aa    MW: 23371.3 Da    PI: 8.3578
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006298.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.62.3e-20100134135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  Do006298.1 100 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 134
                 ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.76E-1493135No hitNo description
PROSITE profilePS5011414.48394130IPR000679Zinc finger, GATA-type
SMARTSM004015.7E-2094146IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-1798134IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.36E-1499131No hitNo description
PfamPF003204.9E-18100134IPR000679Zinc finger, GATA-type
PROSITE patternPS003440100125IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MLQELTPCAC GRFYAGGCGG RCAGAAASAF SMLFPMAAEQ RYYKEDADGS PYGGGPVDCT  60
LSLGTPSTRR AEADVHARAG GGGAAPCKES ASRGSPARRC ANCDTTSTPL WRNGPRGPKS  120
LCNACGIRYK KEERRAAAAV APAPAPQDSG VVGSYACGGY ARQQPLPPQW GCYGAAAAKS  180
ASFGMYGGGD VVDAAADGHC LSWMLNVMPS SPAFAVRERP TLFQYY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006298.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681231.11e-94GATA transcription factor 15
TrEMBLA0A1E5WAB71e-161A0A1E5WAB7_9POAL; Uncharacterized protein
STRINGSi024214m4e-94(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.11e-28GATA transcription factor 20