PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006326.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 453aa    MW: 47618 Da    PI: 7.1006
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006326.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.71.3e-106490127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                ++++ C +++rtG C +G+rC+++H++
  Do006326.1 64 PGEADCGYYLRTGACGFGERCRYNHPR 90
                57899********************96 PP
2zf-CCCH30.37.3e-1097116827
                 GGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                 ++++tGtCk+G++Ck++H++
  Do006326.1  97 YYLKTGTCKFGSNCKYHHPK 116
                 8*****************96 PP
3zf-CCCH39.96.9e-13136161227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C+++++tG+Ck+G++CkF+H++
  Do006326.1 136 GEKECSYYMKTGQCKFGSTCKFHHPE 161
                 7899********************96 PP
4zf-CCCH39.78e-13289315127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C++++rtG+Ck+G++Ck++H++
  Do006326.1 289 PGQPECQYYMRTGECKFGATCKYNHPR 315
                 5789*********************96 PP
5zf-CCCH322e-10338361427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  +C ++a++G+C+yG  Ck+ H++
  Do006326.1 338 QPCAYYAQNGYCRYGVACKYDHPM 361
                 69********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.8E-56390IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6766391IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-86590IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-56791IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-46990IPR000571Zinc finger, CCCH-type
SMARTSM003560.6194116IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-797116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.08497117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-497118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812134162IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6134161IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-10136161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6137161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4140160IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6288315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.582288316IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10290315IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5292316IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4294315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892334362IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6334361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-6335363IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-8338361IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-5338359IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MEPPHAEEAA AAGGGGGGGE GGRASPGTGL EGPMLRLGLD GGGEAEDGER EAEAEADARL  60
PERPGEADCG YYLRTGACGF GERCRYNHPR DRGGTEYYLK TGTCKFGSNC KYHHPKQDGS  120
VQSVILNNNG FPLRPGEKEC SYYMKTGQCK FGSTCKFHHP EFGGIPVTPG IYPPLQSASV  180
PSPHTYAPLA NWQMGRSPVV PGSYIPGSYT PMMLSSGMVP LQGWSPYPAS VNPVASGGAQ  240
QTVQAGPLYG IGHHGSSAAI AYGGSYMPYS SSTGQSSNNH QEHGFPERPG QPECQYYMRT  300
GECKFGATCK YNHPRDWSAA KSNYVFSPLC LPLRPGAQPC AYYAQNGYCR YGVACKYDHP  360
MGTLGYSSSA LPLSDMPISP YPLGFSVATL APSSSSPEYI STKDPSINQV ASPVAAPEPG  420
GAVLAKGIFP PDTIMRTQTS TTGVGSSSPG GGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006326.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9688300.0EU968830.1 Zea mays clone 324384 zinc finger CCCH type domain-containing protein ZFN-like 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967811.10.0zinc finger CCCH domain-containing protein 6
SwissprotQ5NAW20.0C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A1E5WIC60.0A0A1E5WIC6_9POAL; Zinc finger CCCH domain-containing protein 6
STRINGPavir.Eb00942.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-115C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]