PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006463.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 90aa    MW: 10184.8 Da    PI: 8.7545
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006463.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS66.93.9e-21689100180
        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvp.fefnv 180
                  +I++a+ g++++H +D+++  G+QW+ Ll+ LasR++g p+++iT++++p+++   + ++ee++  L+k+A+e+g+p f+f++
  Do006463.1   6 MTIMQAMVGKSKLHXVDYGMCFGFQWVGLLHLLASREGGLPEVKITAIDNPKPKtgPAVRIEEIECWLRKYAHEFGLPsFKFHT 89 
                 68*************************************************999999********************6699997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.999190IPR005202Transcription factor GRAS
PfamPF035141.4E-18689IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
LTFSTMTIMQ AMVGKSKLHX VDYGMCFGFQ WVGLLHLLAS REGGLPEVKI TAIDNPKPKT  60
GPAVRIEEIE CWLRKYAHEF GLPSFKFHTI
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006463.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008677891.12e-37scarecrow-like protein 34 isoform X1
RefseqXP_008677892.12e-37scarecrow-like protein 34 isoform X2
TrEMBLA0A1E5VL203e-60A0A1E5VL20_9POAL; Uncharacterized protein (Fragment)
STRINGPavir.J36189.1.p2e-37(Panicum virgatum)
STRINGGRMZM2G106356_P016e-37(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2273846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.11e-15GRAS family protein