PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006484.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NF-YB
Protein Properties Length: 133aa    MW: 14912 Da    PI: 6.5287
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006484.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB166.34e-5217108293
       NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                 +eqdr+lPian+srim++ +P+n+ki+kdake++qecvsefisf+tseasdkc +ekrktingddl+w+l+tlGfe+yveplk ylk yre+
  Do006484.1  17 KEQDRYLPIANISRIMRRGVPENGKIAKDAKESMQECVSEFISFITSEASDKCMKEKRKTINGDDLIWSLGTLGFEEYVEPLKHYLKLYREV 108
                 89****************************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.6E-4713108IPR009072Histone-fold
SuperFamilySSF471131.71E-3619109IPR009072Histone-fold
PfamPF008082.5E-262285IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.8E-195068No hitNo description
PROSITE patternPS0068505369IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.8E-196987No hitNo description
PRINTSPR006154.8E-1988106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MSEAEGAPEA GGAFGGKEQD RYLPIANISR IMRRGVPENG KIAKDAKESM QECVSEFISF  60
ITSEASDKCM KEKRKTINGD DLIWSLGTLG FEEYVEPLKH YLKLYREVPI KSPPYFSPRA  120
LSLFPVMGTH SYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B3e-4417107494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-4417107494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269|PubMed:14617083}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006484.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0787424e-96KM078742.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-D11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805143.12e-68nuclear transcription factor Y subunit B-4-like
RefseqXP_025805144.12e-68nuclear transcription factor Y subunit B-4-like
SwissprotQ65XK13e-56NFYB4_ORYSJ; Nuclear transcription factor Y subunit B-4
TrEMBLA0A1E5W8Z03e-94A0A1E5W8Z0_9POAL; Nuclear transcription factor Y subunit B-4
STRINGPavir.J18451.1.p8e-71(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.19e-53nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]