PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006497.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 226aa    MW: 24024.3 Da    PI: 8.4906
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006497.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.8e-09146186954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r RR+ri +++ +L++l+P       +K++ a++L +A++Y+k L
  Do006497.1 146 ARLRRERISERIRTLQRLVPGG-----TKMDTASMLDEAIHYVKFL 186
                 699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.675137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-14138206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.24E-14141197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-6147186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.86E-6159191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MNTMLQLEQL TALDGGQSLM APVSPPISPM QTHAPHCFSL SPPPHMSSTT TAGYPDQYTP  60
PAAYAGSTGL EHLQDYVLSP GADGGAGGGG ALHQAGPSSP TSSADAMREV IFHIAALQPV  120
EIDPVAVRPP KRRNVRISKD PQSVAARLRR ERISERIRTL QRLVPGGTKM DTASMLDEAI  180
HYVKFLKSQV QSLERAAAAS HRAAALGAAY PALHAPWQFA LPHGDM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127132RPPKRR
2146151RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006497.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957004.11e-108transcription factor bHLH69
TrEMBLA0A1E5WFY81e-162A0A1E5WFY8_9POAL; Transcription factor HEC1
STRINGSi030966m1e-107(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.15e-41bHLH family protein