PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006542.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 353aa    MW: 37737.7 Da    PI: 10.1314
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006542.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.3e-192267147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l ++v+++G ++W++I+r ++ gR++k+c++rw + 
       Do006542.1 22 KGPWSPEEDEALQRLVARHGARNWSLISRSIP-GRSGKSCRLRWCNQ 67
                     79******************************.***********985 PP
2Myb_DNA-binding53.55.4e-1776118347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEd+ +++a++++G++ W+tIar +  gRt++ +k++w++ 
       Do006542.1  76 PFTPEEDDTILRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 118
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.5971772IPR017930Myb domain
SuperFamilySSF466894.12E-3219115IPR009057Homeodomain-like
SMARTSM007178.3E-172170IPR001005SANT/Myb domain
PfamPF002492.3E-182267IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-262375IPR009057Homeodomain-like
CDDcd001675.33E-162466No hitNo description
SMARTSM007171.7E-1473121IPR001005SANT/Myb domain
PROSITE profilePS5129420.33874123IPR017930Myb domain
CDDcd001671.33E-1176119No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2376122IPR009057Homeodomain-like
PfamPF002491.8E-1476118IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MASSSPSCRA AGGGKPDVDR IKGPWSPEED EALQRLVARH GARNWSLISR SIPGRSGKSC  60
RLRWCNQLSP QVEHRPFTPE EDDTILRAHA RFGNKWATIA RLLSGRTDNA IKNHWNSTLK  120
RKYYAAAAGA AGGSGPVVDA DDERPLKRTS SDGHPGLCFS PGSPSGSDLS DSSHHSLPSV  180
MPSSAAPAVT SQQQQPQHVY RPVPRAGGVV VLPTPLAPRP PSPPPQQQAP PATSLSLSLS  240
LPGLDQQPDP SSPPPPVQMN QQPAPSQMPP PPPPAQAKNL PFQLQPPAMN LAPPRPQQPP  300
PSPAPFSAEF LSMMQEMIRI EVRNYMSGSG LDPRADGAVH AVSKRMMGMA KIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-39141221107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006542.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794250.0HF679425.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB19 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802246.11e-159transcription factor MYB44-like
TrEMBLA0A1E5W9U20.0A0A1E5W9U2_9POAL; Transcription factor MYB44
STRINGGRMZM2G050550_P011e-155(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.11e-66myb domain protein 70