PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006557.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 194aa    MW: 21557.2 Da    PI: 10.2436
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006557.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.91.8e-251261251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                ri+n   rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl+ ++s
  Do006557.1 12 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFHFAS 61
                89********************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-33362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.137363IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-25525IPR002100Transcription factor, MADS-box
PROSITE patternPS003500559IPR002100Transcription factor, MADS-box
CDDcd002652.95E-39576No hitNo description
SuperFamilySSF554557.19E-30588IPR002100Transcription factor, MADS-box
PfamPF003191.2E-241259IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-252540IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-254061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MAGKRERIAI RRIDNLAARQ VTFSKRRRGL FKKAEELSIL CDAEVGLVVF SATGKLFHFA  60
SSSMKQIIDR YDSHSKTLQK SEAPSQLQSH ADERRGAPEA ERPTAARVRE DPRIRARLGT  120
QNQVTHLSTG DLKLQVTRMA RVERQLGVDS EVVYEEGQSS ESVTNTSYPR PPADTDDGGS  180
DTSLRLGLAL FSSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-19575373MEF2C
5f28_B4e-19575373MEF2C
5f28_C4e-19575373MEF2C
5f28_D4e-19575373MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006557.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0092591e-96FJ009259.1 Saccharum officinarum MADS box protein mRNA, complete cds.
GenBankFJ6088261e-96FJ608826.1 Saccharum arundinaceum MADS box transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793844.17e-92MADS-box transcription factor 47-like isoform X2
SwissprotQ5K4R04e-68MAD47_ORYSJ; MADS-box transcription factor 47
TrEMBLA0A1E5VFN41e-139A0A1E5VFN4_9POAL; MADS-box transcription factor 47
STRINGPavir.Ia04527.1.p6e-93(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-43MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]