PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006636.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 253aa    MW: 26768.1 Da    PI: 8.5997
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006636.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.83.1e-34231531128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.p.kkvkaeekewyfFskrdkky.atgkrknratksgyWkatgkdkevlsk. 95 
                 lp GfrF+Ptdeel+ +yL++kv + ++++  +i+++d+ +++PwdL p +     + e +fF+  +++  ++g  + ra+ +g+W+ +gk+k v+s  
  Do006636.1  23 LPIGFRFRPTDEELLLHYLRRKVLACPVPA-GIIPDADLARLHPWDLlPpAGGGDADGERFFFHLPATRCwRKGGGAARAAGTGVWRPSGKEKLVVSPr 120
                 699**************************9.99**************6334433445577888776655516799*********************987 PP

         NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++ vg+k+tLvf +gr + + +tdW mheyrl
  Do006636.1 121 CKRPVGTKRTLVFCRGRGRGAARTDWAMHEYRL 153
                 7889***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-4614192IPR003441NAC domain
PROSITE profilePS5100543.50723193IPR003441NAC domain
PfamPF023651.6E-2024153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEGRPGGAWR MLQGPAGAPV AGLPIGFRFR PTDEELLLHY LRRKVLACPV PAGIIPDADL  60
ARLHPWDLLP PAGGGDADGE RFFFHLPATR CWRKGGGAAR AAGTGVWRPS GKEKLVVSPR  120
CKRPVGTKRT LVFCRGRGRG AARTDWAMHE YRLLPAGLHP FHGCAAAVSN PPTGHVSGHG  180
AAADWVVCRI FKRTKPAAHR GREGDDAEEM PSSPSSASSC VTDTSETGDL EQDDGEESSS  240
SSNGGSSCSV ASN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-262319717169NO APICAL MERISTEM PROTEIN
1ut4_B4e-262319717169NO APICAL MERISTEM PROTEIN
1ut7_A4e-262319717169NO APICAL MERISTEM PROTEIN
1ut7_B4e-262319717169NO APICAL MERISTEM PROTEIN
4dul_A4e-262319717169NAC domain-containing protein 19
4dul_B4e-262319717169NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006636.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9699701e-123EU969970.1 Zea mays clone 337945 NAC domain-containing protein 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817662.11e-133NAC domain-containing protein 83-like isoform X1
TrEMBLA0A1E5W9V10.0A0A1E5W9V1_9POAL; NAC transcription factor ONAC010
STRINGPavir.Eb03721.1.p1e-135(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-33NAC domain containing protein 47