PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006677.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family DBB
Protein Properties Length: 218aa    MW: 22276 Da    PI: 5.4991
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006677.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.21.3e-06546641
    zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                C+ +++ e+   C  ++  lC++C  + H+       H++v 
  Do006677.1  5 CDACGRAEAVVLCCADEAALCRSCDAAVHSAnrlagrHSRVA 46
                *****************************6577888888775 PP
2zf-B_box25.72.4e-0869108437
    zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                 + C+ ++ek   +fC +++ llC+ C ++ H+       H
  Do006677.1  69 PACDICQEKTGYFFCLEDRALLCRPCDVAVHSAgahvasH 108
                 68*****************************657744455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.769147IPR000315B-box-type zinc finger
CDDcd000212.37E-6547No hitNo description
SMARTSM003361.6E-8547IPR000315B-box-type zinc finger
PROSITE profilePS501199.32866113IPR000315B-box-type zinc finger
SMARTSM003361.1E-1266113IPR000315B-box-type zinc finger
PfamPF006439.9E-768104IPR000315B-box-type zinc finger
CDDcd000214.60E-869113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MKIGCDACGR AEAVVLCCAD EAALCRSCDA AVHSANRLAG RHSRVALLPS SATGGPSPNT  60
IVGGGDSHPA CDICQEKTGY FFCLEDRALL CRPCDVAVHS AGAHVASHRR FLITGVRVGG  120
GLECHHVPGS DGLAGAVVSP STSSGNGSSS APSSGNAMTL PDKVRPLSSA RAVAAREDLG  180
DQQWPWSEFL VDDDVATEGM ELFCPLGVSE PVSSSLTG
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006677.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960780.24e-99B-box zinc finger protein 20
SwissprotQ9SYM23e-42BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A1E5WEM91e-154A0A1E5WEM9_9POAL; B-box zinc finger protein 22
STRINGSi024510m1e-98(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121512528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.15e-36light-regulated zinc finger protein 1