PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006685.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 241aa    MW: 26070.9 Da    PI: 8.9011
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006685.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.15.1e-143785153
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                +gy+GVr+++ + +W+AeIr p +   r r+ lg+f+tae+Aa a+++a+ + 
  Do006685.1 37 CGYRGVRRRS-SVKWAAEIRQPGD---RNRHCLGSFDTAEQAALAYDQAAYRV 85
                79*****888.7*********966...4899*******************986 PP
2AP249.21.3e-15146195255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+A Ir p +   r+r +lg+f+taeeAa a+++a+  l+g
  Do006685.1 146 RYRGVRQRR-SGKWAAAIRRPGD---RQRRYLGNFDTAEEAALAYDHAACLLHG 195
                 8*****999.7*********955...4888********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-83786IPR001471AP2/ERF domain
CDDcd000186.44E-193795No hitNo description
SuperFamilySSF541712.22E-183896IPR016177DNA-binding domain
PROSITE profilePS5103218.9793895IPR001471AP2/ERF domain
SMARTSM003807.2E-2338101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-253996IPR001471AP2/ERF domain
CDDcd000188.57E-23145204No hitNo description
SuperFamilySSF541714.32E-19146204IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-25146204IPR001471AP2/ERF domain
PfamPF008471.4E-8146195IPR001471AP2/ERF domain
PROSITE profilePS5103219.52146203IPR001471AP2/ERF domain
SMARTSM003804.7E-28146209IPR001471AP2/ERF domain
PRINTSPR003675.0E-9147158IPR001471AP2/ERF domain
PRINTSPR003675.0E-9185205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MTLISHESMQ QRQRQGQPGL APRGRTMKPA ALVPAQCGYR GVRRRSSVKW AAEIRQPGDR  60
NRHCLGSFDT AEQAALAYDQ AAYRVYGDAA RLNFPERAAA WEAIAEEKAA EAEDARQAPG  120
RGREFSSGET AAEGQPAPLG PCAPKRYRGV RQRRSGKWAA AIRRPGDRQR RYLGNFDTAE  180
EAALAYDHAA CLLHGAGARL NFPERAASWE GEAAMAATAD EANEADTATA ATADTANTMS  240
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-13145210470ATERF1
3gcc_A5e-13145210470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006685.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821943.18e-64ethylene-responsive transcription factor ERF055-like
SwissprotO656654e-20ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLA0A1E5VL501e-172A0A1E5VL50_9POAL; Uncharacterized protein
STRINGSb07g020090.19e-26(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.17e-13ERF family protein