PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006750.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 86aa    MW: 9672.95 Da    PI: 9.3646
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006750.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH278.3e-0914531554
                HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                +iN+ +++L++llP+a + ++   s    L++++ YIksL
  Do006750.1 14 EINELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSL 53
                7**************87788888****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.928153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-10376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0083959IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-91370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-61453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MSSRRSRASV SEEEINELIS RLQTLLPSAR RRGGSQASTT KLLKETCSYI KSLHREVDDL  60
SDRLSDLMAT MDHNSPGAEI IRSLLR
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. {ECO:0000269|PubMed:23136524}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9581591e-113EU958159.1 Zea mays clone 1675661 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965032.11e-54transcription factor ILI4
SwissprotA2X9L81e-44ILI5_ORYSI; Transcription factor ILI5
SwissprotQ6YUX01e-44ILI5_ORYSJ; Transcription factor ILI5
TrEMBLA0A1E5WKV93e-53A0A1E5WKV9_9POAL; Transcription factor ILI5
TrEMBLK3Y0F13e-53K3Y0F1_SETIT; Uncharacterized protein
STRINGSi007662m5e-54(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.11e-26bHLH family protein