PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006872.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 245aa    MW: 26148.8 Da    PI: 5.8991
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006872.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.5e-175199355
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+++++g
  Do006872.1 51 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPCPEMAARAHDVAALSIKG 99
                9****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-124999IPR001471AP2/ERF domain
SMARTSM003802.4E-3450113IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-2050108IPR016177DNA-binding domain
PROSITE profilePS5103222.850107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-3150108IPR001471AP2/ERF domain
PRINTSPR003673.1E-95162IPR001471AP2/ERF domain
CDDcd000182.76E-2851109No hitNo description
PRINTSPR003673.1E-97389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSDLSSDTSS TSSYSSSPST SSSSPKSGRG GGKSKRPRAH DGGDGAGVPA YRGVRMRAWG  60
KWVSEIREPR KKSRIWLGTF PCPEMAARAH DVAALSIKGA RAVLNFPDLA PALPRPASLA  120
PRDVQAAAAR AALMQQQQQK QQSSGGTASS SSPDTPAAVA AAAAAAADDA QRPADAPAHH  180
HHEREPEPSR DQEREPAQVE VAELVFDELA PLWVEDVVEF EPSDHSWTPY DGFDAVGFQP  240
LLWEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1642107472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006872.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9768272e-93EU976827.1 Zea mays clone 991178 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968548.25e-94ethylene-responsive transcription factor ERF034
TrEMBLA0A1E5V3741e-174A0A1E5V374_9POAL; Dehydration-responsive element-binding protein 3
STRINGSi002749m6e-93(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-32ERF family protein