PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006943.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 448aa    MW: 46277.4 Da    PI: 10.1894
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006943.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-1988138155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++y+GVr+++ + +W+AeIrdp     + +r++lg+f tae+Aa+a++aa+++++g
  Do006943.1  88 KKYRGVRRRP-WAKWAAEIRDPQ----KaARVWLGTFATAEDAARAYDAAALRFRG 138
                 59********.**********93....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.20E-1888147No hitNo description
SuperFamilySSF541717.19E-2289147IPR016177DNA-binding domain
PROSITE profilePS5103225.13289146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-3189147IPR001471AP2/ERF domain
SMARTSM003809.0E-3589152IPR001471AP2/ERF domain
PfamPF008471.4E-1289138IPR001471AP2/ERF domain
PRINTSPR003672.6E-1090101IPR001471AP2/ERF domain
PRINTSPR003672.6E-10112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MVAPPTPTVS SEHALAVETA AIVSALTHVV ASGRGAPRPA PAIVMPWRHT DDGGGSSAVG  60
QEQLAGVVGV MWQGTGAQVP APAPAPPKKY RGVRRRPWAK WAAEIRDPQK AARVWLGTFA  120
TAEDAARAYD AAALRFRGSR ARLNFPEDAA ARRARDAEVA SAVASAGPPA ALLESQAAVA  180
NIDAMADYLE YSRILEGGEP SGIMDGLLGG DGNGRFLGSW SIGTSSPSSG SGAAYDAPFF  240
HESDGGRQSS NRNLRACGRD VDDINGGADD AGGVVRARAG GGDRGDRPRS RAAPAIVVPW  300
RRADGGGGSS SSATGRGQLV REAGTVAQAP APAPAIRKFR GVRRRRSEAC RRRHGCGSAP  360
SPRPRTPAAG LRFRGGHARL NFPEDVDRAR NAEADYAVAS SGPPAALLES HAASAAATGD  420
TMANDLEYSR ILEGSEPSGI MVHGWASQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2185146163ATERF1
3gcc_A2e-2185146163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006943.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066325e-58AL606632.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042L16, complete sequence.
GenBankAP0149605e-58AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684509.14e-83ethylene-responsive transcription factor RAP2-6-like
TrEMBLA0A1E5WJ290.0A0A1E5WJ29_9POAL; Uncharacterized protein
STRINGPavir.J15316.1.p5e-91(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142992022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.12e-22related to AP2 6