PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006954.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family DBB
Protein Properties Length: 323aa    MW: 33792.7 Da    PI: 5.1714
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006954.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box217.2e-07446541
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                 C+ +e  e++  C  ++  lC +C  e H        H++ p
  Do006954.1  4 LCSACEAAEASVLCCADDAALCGTCDREVHAAnrlagkHQRLP 46
                7******99*********************6577888998877 PP
2zf-B_box27.27.8e-0961101337
    zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                 ++kC+ ++e  + +fC +++ llC++C ++ H        H
  Do006954.1  61 PPKCDICQECDAYFFCLEDRALLCRSCDVAVHTAnafvsaH 101
                 689****9988*******************99545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.85147IPR000315B-box-type zinc finger
SMARTSM003367.2E-11147IPR000315B-box-type zinc finger
CDDcd000215.74E-7347No hitNo description
PfamPF006434.4E-5447IPR000315B-box-type zinc finger
SMARTSM003362.4E-1359106IPR000315B-box-type zinc finger
PfamPF006431.8E-76193IPR000315B-box-type zinc finger
CDDcd000216.17E-962106No hitNo description
PROSITE profilePS501199.08664106IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MKVLCSACEA AEASVLCCAD DAALCGTCDR EVHAANRLAG KHQRLPLLAP GGQSAAAAVS  60
PPKCDICQEC DAYFFCLEDR ALLCRSCDVA VHTANAFVSA HRRFLLTGVQ VGQELDDPAP  120
EQPEPPPPPP AKSDPAPPLY SESDFSWATG VTGSLVDWSA VNEQFVSPAL RHAEAASRAT  180
PKRSPRAPAF GAGQGYVAGG VMDWPLGEFF RGVSDFNGGF SFGESGTSKA DSGKLGGSAG  240
GSPYYRSSSE DREANELFGQ VPVIQWSVPE LPSPPTASGL HWQHGGPDST AFVPDICSPD  300
SAGRRCFPTA AAAAAAAKRQ RNR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317322KRQRNR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006954.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960600.10.0B-box zinc finger protein 22
TrEMBLA0A1E5WAR40.0A0A1E5WAR4_9POAL; B-box zinc finger protein 22
STRINGSi022650m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.15e-62light-regulated zinc finger protein 1