PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006973.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 168aa    MW: 18835.1 Da    PI: 10.7935
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006973.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.72.6e-121359349
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                ie++  r + f kRr  ++K A+ LS+L +a+va+++ s++g++  +
  Do006973.1 13 IESDNDRIIAFPKRRDRLFKAASDLSTLSGARVAIVLESESGRMSAF 59
                99*****************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.0E-8162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.39363IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-6525IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-14973IPR002100Transcription factor, MADS-box
PfamPF003193.1E-141359IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-62540IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-64061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MPRQPRRSGI HYIESDNDRI IAFPKRRDRL FKAASDLSTL SGARVAIVLE SESGRMSAFG  60
TPSIGPTIDS FLSGNAPVDS FTDEQEKDRI IQLQTDRANR ARGKQGRAEQ ENQGVFGTYQ  120
GDSGKFKDGC KRSECNEEKK RKSKEKKRER RGAGPGARLG WTMKAARW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140148RKSKEKKRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006973.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5W9712e-32A0A1E5W971_9POAL; Uncharacterized protein
STRINGSi032862m2e-31(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.14e-12AGAMOUS-like 64