PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do007027.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

C3H

Protein Properties

Length: 332aa MW: 36173 Da PI: 7.6699

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do007027.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.1	2.5e-12	190	215	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ Do007027.1 190 YQPDICKDYKETGYCGYGDSCKFMHD 215 67789********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.96E-9	188	220	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.878	189	217	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-7	189	216	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-12	190	220	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.6E-10	190	215	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.30.40.10	1.7E-13	263	309	IPR013083	Zinc finger, RING/FYVE/PHD-type
SuperFamily	SSF57850	3.81E-13	267	310	No hit	No description
Pfam	PF13920	2.0E-8	267	308	No hit	No description
CDD	cd00162	4.35E-8	268	309	No hit	No description
SMART	SM00184	1.6E-4	268	305	IPR001841	Zinc finger, RING-type
PROSITE profile	PS50089	10.527	268	306	IPR001841	Zinc finger, RING-type
PROSITE pattern	PS00518	0	283	292	IPR017907	Zinc finger, RING-type, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MADGGGGGGP GAGAGPAPVC SFVRKPPKNI RKRPTAPAGS DDDDDNGGGA LAALRSKKGP 60 SSAGKLVFSS ADASSEPRRF QYESSRTIQS TDTRATATLE TETEFDRDAR AIRERQLKQA 120 EEALKKNPSG APTPSASGSG AGEVYKGIHG YTDYKAGFRR EHTVSSEKAG GSHGPLRASA 180 HIRLSARFDY QPDICKDYKE TGYCGYGDSC KFMHDRGDYK SGWQLEREWD EAEKARKRRI 240 AMGGGDGSND EAAEDDEDDD EEALPFACFI CRQPFVDPVV TKCKHYFCEH CALKHHSKNK 300 KCFVCNKPTL GIFNAAQEIR KKMAQDKKQQ ED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5z56_M	4e-64	82	323	100	317	RING finger protein 113A
5z58_M	4e-64	82	323	100	317	RING finger protein 113A
6ff4_t	4e-64	82	323	100	317	RING finger protein 113A
6ff7_t	4e-64	82	323	100	317	RING finger protein 113A
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do007027.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004951287.1	0.0	zinc finger CCCH domain-containing protein 15
Swissprot	Q6K4V3	1e-172	C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBL	K3YU04	0.0	K3YU04_SETIT; Uncharacterized protein
STRING	Si017753m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8071	36	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-124	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]