PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007171.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 209aa    MW: 21986.6 Da    PI: 9.7396
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007171.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2452.7e-144495356
         AP2  3 ykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkklege 56
                y+ Vr+++ +gr+ AeI+dp      +++ ++lg f++ae Aa+a++aa+++++g+
  Do007171.1 44 YRRVRRRP-SGRFTAEIWDP---AriRKTPIWLGAFDSAEAAARAYDAAARSIRGA 95
                899*****.7*********8...44445*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-2243108IPR001471AP2/ERF domain
PROSITE profilePS5103220.12643102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2343104IPR001471AP2/ERF domain
PRINTSPR003672.1E-84455IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1744103IPR016177DNA-binding domain
PfamPF008474.8E-84794IPR001471AP2/ERF domain
PRINTSPR003672.1E-884104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MLGSERLFPR RRDYARRQAN QISSPAILSE PVPAAPVGDA EVTYRRVRRR PSGRFTAEIW  60
DPARIRKTPI WLGAFDSAEA AARAYDAAAR SIRGAAARTN FPSSASRAVA VAPPVVPPVP  120
HHTVTAPAAA AMSSHSSVVE SWSGEVSGGA ASVTAAGALR GAASVAAEED CRSYCSSSSS  180
VLCEDGASAE EEDCRRRPPS RGARRCPSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1437111881Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007171.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801489.15e-37ethylene-responsive transcription factor 3-like
TrEMBLA0A1E5WD901e-141A0A1E5WD90_9POAL; Uncharacterized protein
STRINGGRMZM2G052720_P015e-29(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347