PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007201.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HSF
Protein Properties Length: 263aa    MW: 29008 Da    PI: 9.4693
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007201.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1056.2e-33411332103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k++++++d++++ +++w   gn+f+vld+  f++ +Lp+yFkh+nfaSFvRQLn+YgF+kv++++         weF+h+sF +g+ +ll  i 
    Do007201.1  41 FVAKTFHMVSDPATDAVVRWGGAGNTFLVLDPAAFSDYLLPSYFKHRNFASFVRQLNTYGFRKVDSDR---------WEFAHESFLRGQAHLLPLIV 128
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   rkk++
    Do007201.1 129 RKKKK 133
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.0E-3630124IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.0E-5037130IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.03E-3238130IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.1E-174164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.6E-2941130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-177991IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434080104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-1792104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGSECKDQLQ LQHAGFGTGG RGGALQSQRQ QEEQAGAIAP FVAKTFHMVS DPATDAVVRW  60
GGAGNTFLVL DPAAFSDYLL PSYFKHRNFA SFVRQLNTYG FRKVDSDRWE FAHESFLRGQ  120
AHLLPLIVRK KKKSGGGREL FEEGEEVRGT IRDVRRLQEE QRGMEEELRA MDRRLRAAES  180
RPCQMMAFLA KLADDPRVVL RAMLAKEEEL AAGKGPLPVE APSKRRRIGV GAEAAGAGGE  240
AAELAQSRGA VPFPFSVLGQ VFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-253813017120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223227KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007201.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9540420.0EU954042.1 Zea mays clone 1452946 heat shock factor protein HSF30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969854.11e-134heat stress transcription factor C-1b
SwissprotQ942D61e-127HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBLA0A1E5W7Y10.0A0A1E5W7Y1_9POAL; Heat stress transcription factor C-1b
STRINGSi002580m1e-134(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-62heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Schmidt R, et al.
    Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica.
    AoB Plants, 2012. 2012: p. pls011
    [PMID:22616023]