PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007205.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family CO-like
Protein Properties Length: 407aa    MW: 44541.4 Da    PI: 7.3727
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007205.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box223.4e-071760339
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                +r C+ + + +++++C  ++ +lC+ C  + H+        H+v
  Do007205.1 17 ARSCDGCMRRRARWHCPADDAFLCQACDASVHSAnplarrhHRV 60
                678*****************************668888886655 PP
2CCT675.2e-23322365144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  Do007205.1 322 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRT 365
                 9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.7271562IPR000315B-box-type zinc finger
SMARTSM003363.6E-81562IPR000315B-box-type zinc finger
PfamPF006432.2E-51759IPR000315B-box-type zinc finger
CDDcd000214.70E-111862No hitNo description
PROSITE profilePS5101715.993322364IPR010402CCT domain
PfamPF062039.2E-18322364IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MTSAGAATGA ALGARTARSC DGCMRRRARW HCPADDAFLC QACDASVHSA NPLARRHHRV  60
RLPSASCSSP PRDPDAPAWL HGLKRRPRTP RSKPGGSNKH EATSASIAAA VSAAVPDLEA  120
EESGSGIVGD NDYHVLEDDD EDLLYRVPVF DPMLAELYNH VADEGEQKPT CLISSLAETS  180
PDFASGSAEA DGLSGFDVPD MELASFAADM ESLLMGVDDG FDDLGFLDEE KPQVNVDFGM  240
DLEAMAVPAP APEREGKKRK RPEMILKLNY EGVIASWVRD GGSPWFHGER PHLDPYESWS  300
DFPAGSRGLL GGAVTAVTGG EREARVSRYR EKRRTRLFAK KIRYEVRKLN AEKRPRMKGR  360
FVKRTSLPPL PRPPPPQQHK LPPRAMMQPH VGMVLAPPLG AHGRFRF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18288LKRRPRT
2332348RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007205.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278430.0KJ727843.1 Zea mays clone pUT5887 C2C2-CO-like transcription factor (COL8) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982006.10.0zinc finger protein CONSTANS-LIKE 16
RefseqXP_025797667.10.0zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A1E5WFM10.0A0A1E5WFM1_9POAL; Zinc finger protein CONSTANS-LIKE 7
STRINGSi035937m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100042228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73870.11e-61B-box type zinc finger protein with CCT domain