PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007233.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family LBD
Protein Properties Length: 181aa    MW: 19551.1 Da    PI: 10.2906
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007233.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26055.81.3e-17763159
      DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redams 59
                +C aCk+lrrkC+++Cv   yfp ++p+kfa vh++FGasnv+kll++lp+ + r+ a+ 
  Do007233.1  7 PCGACKLLRRKCTQGCV---YFPPDNPAKFADVHRVFGASNVSKLLSELPQGTqRQLAAL 63
                7***************9...7999*************************98773555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089112.2146105IPR004883Lateral organ boundaries, LOB
PfamPF031958.2E-18761IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MSSSSSPCGA CKLLRRKCTQ GCVYFPPDNP AKFADVHRVF GASNVSKLLS ELPQGTQRQL  60
AALAAAMEVT REQQDLMMSQ AAAYAPGSSA GATVADAVPY EGGFLFQQQQ PSQAQTAVAL  120
TSIESSLSGD QALTELLSRQ HQRRWSGNVV QDHLRSRVRR GGASPECRRR RCRGSPSRKV  180
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-20475881LOB family transfactor Ramosa2.1
5ly0_B4e-20475881LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007233.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5URT61e-129A0A1E5URT6_9POAL; Uncharacterized protein
STRINGTRIUR3_06488-P14e-26(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61433456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.12e-23ASYMMETRIC LEAVES 2-like 1