PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007234.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 300aa    MW: 31331.7 Da    PI: 6.2334
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007234.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00041223245123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C ++F++   L  H r+H
  Do007234.1 223 HECPYCFRVFPSGQALGGHKRSH 245
                 79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.2E-10157182IPR007087Zinc finger, C2H2
SuperFamilySSF576674.38E-6157180No hitNo description
SMARTSM0035541158178IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.38E-6218245No hitNo description
PfamPF139129.9E-12223245IPR007087Zinc finger, C2H2
PROSITE profilePS501578.871223245IPR007087Zinc finger, C2H2
SMARTSM003550.13223245IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280225245IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MRAHSIAAAK CKSQISSASS ASTSIAAGGG GGVDDDADAK KPSPVQAHVL LREKPKRRVR  60
LAESDFSDRE SETTDYYSPD AAKRGSHDGS GDAEQVSSVS DGDTPVEDVA LSLMMLSRDS  120
WPAPPPPAYY YHPYRVDYSE DESDARPVVA AAQKRTRYEC PACKKVFRSY QALGGHRASN  180
VRGGRGGCCA PPLGTPPPPA PLQPLPECDG GAGEEDSKTA QPHECPYCFR VFPSGQALGG  240
HKRSHLCSAA AAAAAAASGT DPPIAMKSLG FIDLNLPAPS DDVEHSAVSD PFLSPKPAGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15359KPKRRVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007234.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976448.11e-127zinc finger protein ZAT1
TrEMBLA0A1E5WH620.0A0A1E5WH62_9POAL; Uncharacterized protein
STRINGSi010615m1e-126(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.17e-27C2H2-like zinc finger protein