PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007245.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 357aa    MW: 37797.1 Da    PI: 6.6326
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007245.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19175225256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f++ae+Aa a+++a+ +l+g+
  Do007245.1 175 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDSAEDAALAYDKAAFRLRGN 225
                 59******9.**********955...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.41E-30174232No hitNo description
Gene3DG3DSA:3.30.730.108.1E-32175233IPR001471AP2/ERF domain
PROSITE profilePS5103223.143175232IPR001471AP2/ERF domain
SMARTSM003803.4E-36175238IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-22175232IPR016177DNA-binding domain
PRINTSPR003672.4E-10176187IPR001471AP2/ERF domain
PfamPF008472.7E-13176224IPR001471AP2/ERF domain
PRINTSPR003672.4E-10198214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAAIDLYTNQ LSSSSSSSSD QELMKALEPF IRSASSPTSS TSTTTSPFSY PYPYPSALHQ  60
DSYYYYPAAT ASYTALPLPP PPPAPTTTSF SQLPPLPPTS SSYASPAAAP YQTSVDAAAG  120
LALNHLGPVQ IQQIQAQLLL QQQQRGLAAS LLGPRAQPMK QAGAAAPPSS AAAKLYRGVR  180
QRHWGKWVAE IRLPRNRTRL WLGTFDSAED AALAYDKAAF RLRGNAARLN FPSLRRGGAH  240
LAGPLDASVD AKLTAICQGL DAAPVPNNAA TSATTAAPDS PKASASTTTT EGDESVHSAG  300
SPPTILPAFP QQQQHQQAAP LPEMASLDFT EAPWDESAAL HLSKYPSWEI DWDSILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20171232163ATERF1
3gcc_A1e-20171232163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007245.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964981.11e-152ethylene-responsive transcription factor RAP2-13
TrEMBLA0A1E5VNN60.0A0A1E5VNN6_9POAL; Ethylene-responsive transcription factor RAP2-4
STRINGPavir.Da01302.1.p1e-167(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.18e-43related to AP2 4