PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007390.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 320aa    MW: 33907.1 Da    PI: 6.7805
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007390.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016171193123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ykC+ C + F++   L  H+++H
  Do007390.1 171 YKCTFCRRGFPTAQALGGHMNVH 193
                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.53E-6168197No hitNo description
Gene3DG3DSA:3.30.160.603.1E-4168195IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.533171198IPR007087Zinc finger, C2H2
PfamPF139121.3E-5171195IPR007087Zinc finger, C2H2
SMARTSM003550.0061171193IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280173193IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MQQYQHKGRT GGGGGLTRSA PSSDAVNGGR KSAVNSTHQS GSNATTAIKS MAHKQICWQP  60
STPCKVTGIE SPVLSGSKID PIKSKQNADC THPHNPVIHR MELWQIPYAA TPVSNDIYME  120
DLSQETKDEG GARTSPSGEA DEPDDDRDDL QKRQRAGSGD EDDDEGTRQP YKCTFCRRGF  180
PTAQALGGHM NVHRRHRGRS SSAAPTTGAA AAQGSSTCYE QPYYSATTPV VAFGQTHPAS  240
IPSVAAAGVP LLHTERQQPY ELRLFGRDCA AAGRGNKEGG TGDVQRDRCC SVXDGDGXGD  300
HGGXEXLDLE LRLGGSAAGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9718338e-53EU971833.1 Zea mays clone 371263 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955289.14e-57zinc finger protein 7
TrEMBLA0A1E5WIH80.0A0A1E5WIH8_9POAL; Uncharacterized protein
STRINGSi019563m2e-56(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145472224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.15e-08C2H2 family protein