PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do007424.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NF-YA

Protein Properties

Length: 1095aa MW: 118370 Da PI: 8.8854

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do007424.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.6	1.8e-32	941	997	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rakle+++kl k+rkpylheSRh+hA++R Rg+gGrF Do007424.1 941 EEPIFVNAKQYHAILRRRQMRAKLEAQNKL-VKGRKPYLHESRHRHAMKRVRGPGGRF 997 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.3E-36	939	1000	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.619	940	1000	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.7E-27	942	997	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.9E-23	943	965	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	945	965	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.9E-23	974	997	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1095 aa Download sequence Send to blast
MASRGGHSGI GDSSRNGAKR HDSNKENTSQ QGLNAFRMQK DRQTEWARPG RVFNRNTNRG 60 GYSRSSLPGF TQEFRIVKDN RIKLNEAGVS LPEASHNSDS SNECSVSNVG DKCSTEKLAE 120 QHCLVTPNVN GHGAAQANNG IKSAAQAHDK EVKPSSVRKL EQPEGMQATL VGSHAILGKG 180 NQNRVDNVSS RKNNFGGELC CSSSDPIHVP SPGSKSAGTF GAIKREVGVV GARQRPSDGA 240 ATNTSTSNSL AKVTSAPKDT NERNGHFNLP VPLSGRASHH VNHTKVSPHL EWKPKSISPS 300 SVNHEVIVVP PGVNSHQAEV AGLSKKLSQA NVSQDEHVII PEHIRVPDSE RTHLIFGSFE 360 SEVDPKASVT ASHTVVSKED LNDRSPSSSL AALNSIISTD VAHNDKTDHV GSCSPLPQPE 420 SVVSVSEHQQ SLTESVEDPS LGVVVEYGTN EMISSKVTHS QPQLHHQDNP AIQNFKAYEP 480 DSRYAKPFIT KTVDGETAQS IAYPSEAMGM GLHPANAYQL PASGATQQPL PQMYPQQFQV 540 PQYPNFLPYR HVFSPQYGPS MVVSNYSSNP AFPQLPHTSS YLVMPNGASQ LAANGMKYGS 600 SHQYKQVFQG TPAGYGGYAN HNCYPVSNSV IGSTGVIEDV NMNKYKDNGL YAPNAQAETA 660 DLWVQGHREI PNMPSAPFYN MVGQPVSPHA PYLTPHNGHH PSFSPVHPHP AHLQYPGFPQ 720 ALHPTSMTMV QNPQAMVHQP GAPPTAGNLG LDMAAMAPGS QVGAFQQNQL GHLGKKQNVS 780 GAWVMPSDNK MLLREMDGVP FNTMPNYDFL SGNGYSMKQL IRSNSDRDSS STKSEQSRQD 840 LSAVSDSSLN GQHTPTQSDN NDSCGKRDQG MMKSVLSFGN PEAAFPPPKF DYSQPFACAS 900 YTADPYYGGV LTGYTPNAIV YPQINGAPNS RVPLPVEPAA EEPIFVNAKQ YHAILRRRQM 960 RAKLEAQNKL VKGRKPYLHE SRHRHAMKRV RGPGGRFLTK KELQEQQQKP IPSLQTPTGR 1020 VGKMAFGRNL CPGNSTSHSP STSSGISSVS NGGGMLAHQE HISFSSTNFL HGMNFRAENG 1080 GEKMAVNGIH HHTPS

Sequence ? help Back to Top

Protein Sequence Length: 1095 aa Download sequence Send to blast

MASRGGHSGI GDSSRNGAKR HDSNKENTSQ QGLNAFRMQK DRQTEWARPG RVFNRNTNRG  60
GYSRSSLPGF TQEFRIVKDN RIKLNEAGVS LPEASHNSDS SNECSVSNVG DKCSTEKLAE  120
QHCLVTPNVN GHGAAQANNG IKSAAQAHDK EVKPSSVRKL EQPEGMQATL VGSHAILGKG  180
NQNRVDNVSS RKNNFGGELC CSSSDPIHVP SPGSKSAGTF GAIKREVGVV GARQRPSDGA  240
ATNTSTSNSL AKVTSAPKDT NERNGHFNLP VPLSGRASHH VNHTKVSPHL EWKPKSISPS  300
SVNHEVIVVP PGVNSHQAEV AGLSKKLSQA NVSQDEHVII PEHIRVPDSE RTHLIFGSFE  360
SEVDPKASVT ASHTVVSKED LNDRSPSSSL AALNSIISTD VAHNDKTDHV GSCSPLPQPE  420
SVVSVSEHQQ SLTESVEDPS LGVVVEYGTN EMISSKVTHS QPQLHHQDNP AIQNFKAYEP  480
DSRYAKPFIT KTVDGETAQS IAYPSEAMGM GLHPANAYQL PASGATQQPL PQMYPQQFQV  540
PQYPNFLPYR HVFSPQYGPS MVVSNYSSNP AFPQLPHTSS YLVMPNGASQ LAANGMKYGS  600
SHQYKQVFQG TPAGYGGYAN HNCYPVSNSV IGSTGVIEDV NMNKYKDNGL YAPNAQAETA  660
DLWVQGHREI PNMPSAPFYN MVGQPVSPHA PYLTPHNGHH PSFSPVHPHP AHLQYPGFPQ  720
ALHPTSMTMV QNPQAMVHQP GAPPTAGNLG LDMAAMAPGS QVGAFQQNQL GHLGKKQNVS  780
GAWVMPSDNK MLLREMDGVP FNTMPNYDFL SGNGYSMKQL IRSNSDRDSS STKSEQSRQD  840
LSAVSDSSLN GQHTPTQSDN NDSCGKRDQG MMKSVLSFGN PEAAFPPPKF DYSQPFACAS  900
YTADPYYGGV LTGYTPNAIV YPQINGAPNS RVPLPVEPAA EEPIFVNAKQ YHAILRRRQM  960
RAKLEAQNKL VKGRKPYLHE SRHRHAMKRV RGPGGRFLTK KELQEQQQKP IPSLQTPTGR  1020
VGKMAFGRNL CPGNSTSHSP STSSGISSVS NGGGMLAHQE HISFSSTNFL HGMNFRAENG  1080
GEKMAVNGIH HHTPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	7e-22	941	1017	2	72	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	981	990	RHRHAMKRVR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do007424.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797213.1	0.0	uncharacterized protein LOC112877207 isoform X1
TrEMBL	A0A1E5WC90	0.0	A0A1E5WC90_9POAL; Uncharacterized protein
STRING	Pavir.Ib01913.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	7e-29	nuclear factor Y, subunit A3