PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do007514.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

GeBP

Protein Properties

Length: 239aa MW: 25962 Da PI: 6.4005

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do007514.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	37.3	7.7e-12	4	53	48	97
DUF573 48 kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +++ ql+eK+rrLK+Kf+ + +++ g +p+ ++hd+++++l++++W+ Do007514.1 4 PYTRAQLSEKLRRLKNKFRSVSVRVAGGLDPARLAPHDRDVLHLCSRLWD 53 57899********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	7.1E-10	4	53	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MPQPYTRAQL SEKLRRLKNK FRSVSVRVAG GLDPARLAPH DRDVLHLCSR LWDPANAATS 60 PFAVSAGSSG NKRRRANPRG TQLPLPDASG DSNSHDYNGI ISSAPGLFPD GSNGEDMFYL 120 EQESGHLGDH QGAALVADSK FGVIVQEQPE TLAALPNGNN GIGNEMNGDQ KMVVPCSNEH 180 RMANAVLDVF EECLREAKAN GSAEESELAK RWRVQRMDEL DVLSRRLRLL VEDAAAAGH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do007514.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002464013.1	1e-148	probable transcription factor At3g04930
Refseq	XP_021307245.1	1e-148	probable transcription factor At3g04930
TrEMBL	A0A1E5W5V2	1e-175	A0A1E5W5V2_9POAL; Uncharacterized protein
STRING	Sb01g010570.1	1e-147	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8695	32	43