PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007526.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 227aa    MW: 23990.4 Da    PI: 10.5848
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007526.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.11.5e-31211601128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkya....tgkrknratksgyWkatgkdkevls 94 
                 lppGfrF+Ptdeelvv+yL++k+ g +l++  vi+ v d+y+++Pwd+p+  +a+e e yfF+ r         +++ ++rat+sg+Wk  gk+k+v+ 
  Do007526.1  21 LPPGFRFRPTDEELVVQYLRRKAFGVPLPA-AVIPVVrDLYSIDPWDIPA--DASEGEKYFFAVRPAGVVgggcSKSGATRATASGRWKPAGKEKPVVL 116
                 79****************************.8899999***********4..4567799*****999887555556688999****************9 PP

         NAM  95 k.....kgelvglkktLvfy....kgrapkge.....ktdWvmheyrl 128
                       ++ lvg+k+ ++f     k    k+       + Wvmheyrl
  Do007526.1 117 PrpcggGSLLVGVKRAMTFTprrnK----KAAtsaslAAGWVMHEYRL 160
                 9899877777**********65431....33222233789******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-4017186IPR003441NAC domain
PROSITE profilePS5100542.44421186IPR003441NAC domain
PfamPF023656.0E-2122160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MESAAPVLVR HAGGVAALRQ LPPGFRFRPT DEELVVQYLR RKAFGVPLPA AVIPVVRDLY  60
SIDPWDIPAD ASEGEKYFFA VRPAGVVGGG CSKSGATRAT ASGRWKPAGK EKPVVLPRPC  120
GGGSLLVGVK RAMTFTPRRN KKAATSASLA AGWVMHEYRL AAPLHKNGCS LTQAEGEWVV  180
CRVFQRSNRP RRRAVPAGNG HAASPSSSSA ASCVTDGSGS DQEEVSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-292118817167NO APICAL MERISTEM PROTEIN
1ut4_B5e-292118817167NO APICAL MERISTEM PROTEIN
1ut7_A5e-292118817167NO APICAL MERISTEM PROTEIN
1ut7_B5e-292118817167NO APICAL MERISTEM PROTEIN
3swm_A6e-292118820170NAC domain-containing protein 19
3swm_B6e-292118820170NAC domain-containing protein 19
3swm_C6e-292118820170NAC domain-containing protein 19
3swm_D6e-292118820170NAC domain-containing protein 19
3swp_A6e-292118820170NAC domain-containing protein 19
3swp_B6e-292118820170NAC domain-containing protein 19
3swp_C6e-292118820170NAC domain-containing protein 19
3swp_D6e-292118820170NAC domain-containing protein 19
4dul_A5e-292118817167NAC domain-containing protein 19
4dul_B5e-292118817167NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007526.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0865713e-73BT086571.1 Zea mays full-length cDNA clone ZM_BFc0184N14 mRNA, complete cds.
GenBankDQ2454913e-73DQ245491.1 Zea mays clone 16115 mRNA sequence.
GenBankDQ2460953e-73DQ246095.1 Zea mays clone 16151 mRNA sequence.
GenBankEU9709063e-73EU970906.1 Zea mays clone 353721 NAC domain-containing protein 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974022.11e-124NAC domain-containing protein 18
TrEMBLK3YJI91e-122K3YJI9_SETIT; Uncharacterized protein
STRINGSi014408m1e-123(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.11e-38NAC domain containing protein 41