PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007631.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HSF
Protein Properties Length: 379aa    MW: 42551 Da    PI: 5.2262
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007631.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.61.6e-32471372101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+++++ d+++++++sw ++gnsfvv+d++ fa  +Lp++Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+++ll+ ik
    Do007631.1  47 FLTKTFDLVADPATDQVVSWGRTGNSFVVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLRGQRQLLRLIK 134
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r++
    Do007631.1 135 RRR 137
                   *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.0E-3743136IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.04E-3443136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.6E-5943136IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.8E-3047136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-194770IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-198597IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434086110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-1998110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MDPLLPVMVA VKEECPPSSP PEEVEDMDAA GAPRPMEGLH EVGPPPFLTK TFDLVADPAT  60
DQVVSWGRTG NSFVVWDPHV FAAVLLPRFF KHNNFSSFVR QLNTYGFRKI DPDRWEFANE  120
GFLRGQRQLL RLIKRRRPPS YLPGSQQQQQ HALGSCLEVG QFGGGLDEEM DRLKRDKNIL  180
LAEVVKLRQE QQSTRAGMQA MEERLQHAEH KQVQMMGFLA RAMQNPDFFQ QLVQHQDRRK  240
ELEDAFSRKR RRPIDAAPFA TVVAGGGEAS SCLQDEQQVD LFRSGGFDEL SGEPGTSELE  300
NLALNIQGLG KRKQQDESGG ETAELTDDFW EELLSEGMSG GAGTAAMPVP PEMEKRQRPW  360
RYVDALARKL SSMSNSTAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-254513618120Heat shock factor protein 1
5d5u_B2e-254513627129Heat shock factor protein 1
5d5v_B2e-254513627129Heat shock factor protein 1
5d5v_D2e-254513627129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135RLIKRR
2237251RRKELEDAFSRKRRR
3247251RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007631.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985605.10.0heat stress transcription factor A-2d
SwissprotQ8H7Y61e-173HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLA0A1E5WLF60.0A0A1E5WLF6_9POAL; Heat stress transcription factor A-2d
STRINGSi038907m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.13e-96heat shock transcription factor A6B