PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007647.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 350aa    MW: 35582.9 Da    PI: 5.8913
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007647.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.9e-20148197255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+AeIrdp     +   r++lg+f tae Aa+a+++a+++++g
  Do007647.1 148 RYRGVRQRP-WGKWAAEIRDP-----HkaSRVWLGTFETAEAAARAYDEAALRFRG 197
                 7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.55E-22148206IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-33148206IPR001471AP2/ERF domain
SMARTSM003804.4E-37148211IPR001471AP2/ERF domain
PROSITE profilePS5103225.633148205IPR001471AP2/ERF domain
PfamPF008471.4E-13148197IPR001471AP2/ERF domain
PRINTSPR003679.9E-12149160IPR001471AP2/ERF domain
CDDcd000183.40E-13156207No hitNo description
PRINTSPR003679.9E-12171187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MADGRRSLAG GWPAEEDGDA AASALLSGEY QALEMSTMVS ALAHVVAGGD DDGAYPSWAG  60
GRGDPAEAMA VPGSGYVHAA QQWGSYSAAA APTPDHFAAA ARKCVFISFI VCVHSRAGED  120
VQGAAAAGME EHSPTGTGAA EASGGGRRYR GVRQRPWGKW AAEIRDPHKA SRVWLGTFET  180
AEAAARAYDE AALRFRGSRA KLNFPEDARL TIPSTAVATA APAAAAASST TTMAASAPGA  240
YPASSAASEY LQYQMLLQGA AGGHGGFPQY YGGGGGAMSS SSGSYSFPAS SVTVASAPPS  300
SASSAPGGYG EAAQWTRTSW PDQSAWSYPA TTTGSWSGSS YYPPSTRPPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-23146205363ATERF1
3gcc_A1e-23146205363ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007647.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0393901e-82BT039390.1 Zea mays full-length cDNA clone ZM_BFc0010H11 mRNA, complete cds.
GenBankJX4699491e-82JX469949.1 Zea mays subsp. mays clone UT3210 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809416.15e-71ethylene-responsive transcription factor ABR1-like
TrEMBLA0A1E5V7850.0A0A1E5V785_9POAL; Uncharacterized protein
STRINGPavir.J02402.1.p2e-90(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.16e-16ethylene response factor 110