PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007743.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 181aa    MW: 19865.3 Da    PI: 5.0286
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007743.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-171059255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +y+GVr +k +g+Wv+eIr p   g ++r++lg+f +ae+Aa a++ a+++l+g
  Do007743.1 10 QYRGVRKRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 59
                69****999.**********8...325*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-211067IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-311067IPR001471AP2/ERF domain
PROSITE profilePS5103223.5121067IPR001471AP2/ERF domain
SMARTSM003805.5E-351073IPR001471AP2/ERF domain
CDDcd000181.88E-301167No hitNo description
PfamPF008473.3E-111159IPR001471AP2/ERF domain
PRINTSPR003675.9E-101122IPR001471AP2/ERF domain
PRINTSPR003675.9E-103349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MSSSSSQQQQ YRGVRKRKWG KWVSEIRQPG TKTRIWLGSF ESAEMAAVAH DVAALRLRGR  60
DAQLNFPGCV AWLPRPASTH PADVRAAAAE AADRVRCDPA LLVLQQQAAR FHDHDGFEIG  120
AGPVVDLVGS DEEFELDLDS PRLWAEMAEA MLLDPPGWAT SVGDAEVAQQ CWSHGSLWDA  180
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-17667163ATERF1
3gcc_A4e-17667163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007743.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9581351e-161EU958135.1 Zea mays clone 1674836 dehydration-responsive element-binding protein 1D mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975709.12e-97ethylene-responsive transcription factor ERF027-like
TrEMBLA0A1E5W4881e-128A0A1E5W488_9POAL; Uncharacterized protein
STRINGLPERR04G10650.15e-66(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.12e-25ERF family protein