PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007817.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family SBP
Protein Properties Length: 225aa    MW: 23180.9 Da    PI: 10.008
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007817.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP699.4e-22178225148
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                 +Cqv++C+adl++ak+yhrrhkvCe+hsk++++lv+ ++qrfCqqCsr
  Do007817.1 178 MCQVDDCRADLTSAKDYHRRHKVCETHSKTTKALVASQMQRFCQQCSR 225
                 6**********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.9E-23172225IPR004333Transcription factor, SBP-box
PROSITE profilePS5114119.58176225IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.31E-20177225IPR004333Transcription factor, SBP-box
PfamPF031101.4E-15179225IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MQREVGPQVA PPLFLHQIQP LPPHAAAAPK KRAHPWPAAV AAPGEAGAGN WNPKMWDWDS  60
RALSARPSAD ALQLGGGAQG QQQKQQQPAS AAAEAHRPGA GGNGPLNLHL GPREDSATPM  120
DASPPLAPVV SSPSPPASAA AGQEPVVRPS KRVRSGSPGS AGGSGGGGAA NGGASYPMCQ  180
VDDCRADLTS AKDYHRRHKV CETHSKTTKA LVASQMQRFC QQCSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A8e-22179225652squamosa promoter-binding protein-like 12
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007817.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320166.11e-80squamosa promoter-binding-like protein 15
SwissprotA2YX041e-68SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M81e-68SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLA0A1E5VCP71e-158A0A1E5VCP7_9POAL; Squamosa promoter-binding-like protein 15 (Fragment)
STRINGSb07g027420.16e-80(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54563853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.12e-24squamosa promoter binding protein-like 14