PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007823.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 190aa    MW: 21055.1 Da    PI: 10.8912
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007823.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.71e-202168249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +i++  +r vtfskR+ g+l KA+ELS LC+a+vavi+fs  g+ +e+
  Do007823.1 21 FIKDPARRMVTFSKRKSGLLNKASELSLLCGARVAVIVFSAAGRPFEF 68
                799****************************************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.6141272IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-261271IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-241384IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-181434IPR002100Transcription factor, MADS-box
PfamPF003194.2E-222168IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-183449IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-184970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MVAPRGTGRT SQGRKRIDIA FIKDPARRMV TFSKRKSGLL NKASELSLLC GARVAVIVFS  60
AAGRPFEFGS PSLDHVLRRF APLPAGDEDG LGFPDDAIYG DEREAVEVTA RRVKEVKARV  120
AEEESRMAAV GKKVLGASAG RVWWEADVEA LGEEELREFA RALRRLRDNV RRHADKLMLT  180
PASQPTTRRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-171381270Myocyte-specific enhancer factor 2B
1tqe_Q4e-171381270Myocyte-specific enhancer factor 2B
1tqe_R4e-171381270Myocyte-specific enhancer factor 2B
1tqe_S4e-171381270Myocyte-specific enhancer factor 2B
6c9l_A4e-171381270Myocyte-specific enhancer factor 2B
6c9l_B4e-171381270Myocyte-specific enhancer factor 2B
6c9l_C4e-171381270Myocyte-specific enhancer factor 2B
6c9l_D4e-171381270Myocyte-specific enhancer factor 2B
6c9l_E4e-171381270Myocyte-specific enhancer factor 2B
6c9l_F4e-171381270Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007823.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962402.12e-89agamous-like MADS-box protein AGL29
TrEMBLA0A1E5V5P81e-132A0A1E5V5P8_9POAL; Uncharacterized protein
STRINGSi023118m3e-86(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.15e-21AGAMOUS-like 29