PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007883.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 499aa    MW: 52715 Da    PI: 7.9793
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007883.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.6e-32234290259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 dDgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+
  Do007883.1 234 DDGYNWRKYGQKVVKGSDCPRSYYKCTHPNCPVKKKVEHAE-DGQISEIIYKGKHNHQ 290
                 8**************************************99.***************8 PP
2WRKY1084.6e-34390448159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe
  Do007883.1 390 LDDGYRWRKYGQKVVKGNPHPRSYYKCTFAGCNVRKHIERASSDPKAVITTYEGKHNHE 448
                 59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-28230292IPR003657WRKY domain
SuperFamilySSF1182902.48E-25232292IPR003657WRKY domain
SMARTSM007742.5E-34233291IPR003657WRKY domain
PfamPF031061.5E-24234290IPR003657WRKY domain
PROSITE profilePS5081123.192234292IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.9E-37376450IPR003657WRKY domain
SuperFamilySSF1182902.88E-29382450IPR003657WRKY domain
PROSITE profilePS5081137.413385450IPR003657WRKY domain
SMARTSM007747.0E-40390449IPR003657WRKY domain
PfamPF031064.1E-26391448IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MSARPPPPPR PRLALPPRSA AESLFTGAGD ESPGPLTLAS ALFPSDADAS GGGPGGGASS  60
GASGAASFTQ LLTGSLGPPP HQQRQQHEAA ERGRGGGVAR AGPALSVAPP ASASAGASVF  120
TVPPGLSPSG LLDSPGLLFS PAMGGFGMSH QQALAQVTAQ ATHSPLRMFD HIEQPSFSAA  180
AASSGALQHM NSTANMTGVS EMAMATANND NTSFQSAEAS QRYQVNAPVD KPADDGYNWR  240
KYGQKVVKGS DCPRSYYKCT HPNCPVKKKV EHAEDGQISE IIYKGKHNHQ RPPNKRAKDG  300
NSSAADQNEQ SNDATSGLSG AKRDQDAIYG MSEQVSGLSD GDDMDDGESR PHEADDADNE  360
SKRRNIQISS QRTLSEPKII VQTTSEVDLL DDGYRWRKYG QKVVKGNPHP RSYYKCTFAG  420
CNVRKHIERA SSDPKAVITT YEGKHNHEPP VGRGGNQNAG MSQQKGQNSI SSNQASLSRA  480
VYNNTNQMPI GILQFKSEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-39224450877Probable WRKY transcription factor 4
2lex_A7e-39224450877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007883.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0341960.0BT034196.1 Zea mays full-length cDNA clone ZM_BFc0028G06 mRNA, complete cds.
GenBankBT0538110.0BT053811.1 Zea mays full-length cDNA clone ZM_BFb0199A02 mRNA, complete cds.
GenBankBT0548220.0BT054822.1 Zea mays full-length cDNA clone ZM_BFb0078G18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147897.20.0uncharacterized protein LOC100281507
TrEMBLA0A1E5W5420.0A0A1E5W542_9POAL; Putative WRKY transcription factor 3
STRINGGRMZM2G076657_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-92WRKY DNA-binding protein 3