PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do007889.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

C2H2

Protein Properties

Length: 467aa MW: 50274.8 Da PI: 8.5986

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do007889.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.8	2.4e-07	215	238	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++CpdCg+ F r+++L+ H+++ H Do007889.1 215 FPCPDCGEIFVRQESLQLHQSVrH 238 89******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.0081	215	238	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.305	215	239	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	217	238	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	2.49E-18	240	462	No hit	No description
Gene3D	G3DSA:3.90.228.10	2.4E-13	243	464	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MVEPGRSAAA KEAKKTSSTS TAAAMKKKLM NKKKPADKEK EEASGGCMTK KQSSHCTTEP 60 ESPSYRLALR SLFSCRNSHG HSHSHHHHAS APDSGSRSRK LGCSAPSICK LKDSDSSQRV 120 AQRPPPDETA TGGEPCKRRA SVSGSSERCV KKPLSELSNA NSKQLQRGGS SLSSSSSSGG 180 SFRAGMQLRR LSGCYECHMV VDPVSGSASM RATVFPCPDC GEIFVRQESL QLHQSVRHAV 240 CELGAEDTSR NIIEIIFQSS WLKKQSPVCK IERILKVHNT ARTLARFEEY RDAVKAKAKA 300 AQQAKKHPRC TADGNELLRF HCATLSCALG LDGATHLCDA AGSSCGACGI IRDGFYCSRG 360 GVRTMATSGR AHDAVAEEGE GVLLDDLKEE ERSRAMLVCR VIAGRVKRPK EAAAQEAEAE 420 AEEEEEEHDS VAGSAGVYSS LEELLVFNPR AILPCFVVVY KHKQAAA

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MVEPGRSAAA KEAKKTSSTS TAAAMKKKLM NKKKPADKEK EEASGGCMTK KQSSHCTTEP  60
ESPSYRLALR SLFSCRNSHG HSHSHHHHAS APDSGSRSRK LGCSAPSICK LKDSDSSQRV  120
AQRPPPDETA TGGEPCKRRA SVSGSSERCV KKPLSELSNA NSKQLQRGGS SLSSSSSSGG  180
SFRAGMQLRR LSGCYECHMV VDPVSGSASM RATVFPCPDC GEIFVRQESL QLHQSVRHAV  240
CELGAEDTSR NIIEIIFQSS WLKKQSPVCK IERILKVHNT ARTLARFEEY RDAVKAKAKA  300
AQQAKKHPRC TADGNELLRF HCATLSCALG LDGATHLCDA AGSSCGACGI IRDGFYCSRG  360
GVRTMATSGR AHDAVAEEGE GVLLDDLKEE ERSRAMLVCR VIAGRVKRPK EAAAQEAEAE  420
AEEEEEEHDS VAGSAGVYSS LEELLVFNPR AILPCFVVVY KHKQAAA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do007889.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824982.1	0.0	uncharacterized protein LOC112900370
TrEMBL	A0A1E5WJJ3	0.0	A0A1E5WJJ3_9POAL; Uncharacterized protein
STRING	Si025079m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2633	38	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	9e-89	C2H2-like zinc finger protein