PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007895.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ARF
Protein Properties Length: 510aa    MW: 55497 Da    PI: 5.9446
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007895.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.41.5e-24110211199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g +++p+ +a+++         ++ +   l ++d++ + W++++iyr++++r++lt+GW++Fv+a+ L +gD+vvF+  +r ++el
  Do007895.1 110 FAKQLTQSDANNGGGFSVPRYCADHIfpkldfeADPPVQ--NLLMRDPKAKHWQFRHIYRGTPRRHLLTTGWSKFVNAKLLVAGDTVVFM--RRPDGEL 204
                 89******************999777*****96555555..6************************************************..679**** PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  Do007895.1 205 LIGLRRA 211
                 ****997 PP
2Auxin_resp58.52.8e-20244313168
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkma.fetedsserrl.sGtvvgvsd 68 
                 aa+ a+++s+F+v+Y Pr++++eFvv++++ve+al +++ +G++++m+ +e ed++++++  Gtv +++ 
  Do007895.1 244 AARLAAEGSPFTVTYFPRQGAAEFVVPRKEVEDALASNWEPGTQVRMQvMEAEDARRIEWaNGTVKDLHP 313
                 688999*****************************************858***************98864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.46E-28102214IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-33104213IPR015300DNA-binding pseudobarrel domain
CDDcd100177.94E-20109210No hitNo description
SMARTSM010193.5E-16110212IPR003340B3 DNA binding domain
PfamPF023622.5E-21110211IPR003340B3 DNA binding domain
PROSITE profilePS5086312.816110212IPR003340B3 DNA binding domain
PfamPF065074.5E-15244313IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MEAQPPPATV VDRDVWLACA VPLSRLPVVG AEVYYFPHGH AEQCPEHLPA PLPTPHIFPC  60
VVTAISLGAD DKTNEVFAQI SLKPGPHRGP AAPAPDADPT NPQQQQLSYF AKQLTQSDAN  120
NGGGFSVPRY CADHIFPKLD FEADPPVQNL LMRDPKAKHW QFRHIYRGTP RRHLLTTGWS  180
KFVNAKLLVA GDTVVFMRRP DGELLIGLRR APRYPVVPKL DAAQQQPPPR NARARVPPAD  240
VMEAARLAAE GSPFTVTYFP RQGAAEFVVP RKEVEDALAS NWEPGTQVRM QVMEAEDARR  300
IEWANGTVKD LHPNMWRPLE IDWDDSSPFS ETRGRYVNTW QVQFVSFPPL LKRLRISDTI  360
APLCSGDGSY LPAPLIGPES QAMPILLGSP IPAGMQGARH SGPSDDVPPP SSSTMGMLTT  420
QLLFPLPSGG LQMPPSIVSP SGGSSEIFDP EIDSPPNNSV STPPPELPVE AKSIQLFGAT  480
ITPHVAPNAA SKEVNGAVNR VVDENVGKDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-621032550372Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007895.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825005.10.0auxin response factor 13-like
SwissprotQ7XSS91e-152ARFM_ORYSJ; Auxin response factor 13
TrEMBLA0A1E5WJL10.0A0A1E5WJL1_9POAL; Auxin response factor
STRINGSi021833m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113553137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.13e-89auxin response factor 17
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]