PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007975.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 238aa    MW: 24638.7 Da    PI: 4.8634
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007975.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-183685255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ykGVr ++ +g+Wv+eIr p   ++++r++lg++ t+e Aa+a++aa ++l+g
  Do007975.1 36 PYKGVRMRS-WGSWVSEIRAP---NQKRRIWLGSYATPEAAARAYDAALLCLKG 85
                59****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-343699IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-293694IPR001471AP2/ERF domain
PROSITE profilePS5103221.9973693IPR001471AP2/ERF domain
PfamPF008471.2E-113785IPR001471AP2/ERF domain
CDDcd000184.13E-193794No hitNo description
PRINTSPR003675.3E-83748IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-193795IPR016177DNA-binding domain
PRINTSPR003675.3E-85975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVKNTSNGVA TATAFSDDKA RPESGVVGGN KAAARPYKGV RMRSWGSWVS EIRAPNQKRR  60
IWLGSYATPE AAARAYDAAL LCLKGSDAVL NFPASSSSPS SPHRVDTXHS DPASSGAMSP  120
RSIQRAAAAA AAAFDAGLSV SVDDMCSSSA GATIPTSAAS ASQLSTLCSA XHVQEHATSS  180
SAAASTGSPA EEDELWTDLD AFASPKFMDL MAAGAAPFSS TWEDPEDDGE VMRLWSFC
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007975.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276604e-85KJ727660.1 Zea mays clone pUT5587 AP2-EREBP transcription factor (EREB173) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795709.11e-115ethylene-responsive transcription factor ERF014-like
TrEMBLA0A1E5V8641e-167A0A1E5V864_9POAL; Uncharacterized protein
STRINGPavir.Ia03856.1.p1e-114(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108303040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.12e-24ERF family protein